RetrogeneDB ID: | retro_cpor_1268 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_61:5184315..5184560(-) | ||
Located in intron of: | ENSCPOG00000012770 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS21 | ||
Ensembl ID: | ENSCPOG00000001965 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S21 [Source:UniProtKB/TrEMBL;Acc:H0UXF6] |
Percent Identity: | 62.65 % |
Parental protein coverage: | 98.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQNDAGEFVDLYVPRKCSASNRI-IGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSI |
MQN...E.V.L.VP.KCSA.....I..KDHASIQM.VA..DKVT..FNGQF.T..IC.AIRR.G..D.SI | |
Retrocopy | MQNYITECVGLHVPWKCSANKTV<IVTKDHASIQMDVAKSDKVTDGFNGQFETDVICRAIRRTGKADESI |
Parental | LRLAKADGIVSKN |
L.L.KA.GI.SKN | |
Retrocopy | LPLGKAGGILSKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 62 .39 RPM |
SRP017611_liver | 0 .00 RPM | 50 .01 RPM |
SRP040447_lung | 0 .00 RPM | 157 .00 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 154 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017399 | 2 retrocopies | |
Bos taurus | ENSBTAG00000020795 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000012676 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000014195 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000001965 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023745 | 7 retrocopies | |
Latimeria chalumnae | ENSLACG00000012753 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016769 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000003361 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000011205 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000013708 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006325 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000021825 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001029 | 5 retrocopies |