RetrogeneDB ID: | retro_pabe_3503 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:107122714..107122942(-) | ||
Located in intron of: | ENSPPYG00000019494 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000011205 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.13 % |
Parental protein coverage: | 92.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | EFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKAD |
EFVDLY...KCS.SN.I.GAKDHAS.Q.N.A.VD.V.G.FNGQFKTY..CG.I.RMGESDDSIL.L.K.. | |
Retrocopy | EFVDLYMQ*KCSSSNHIMGAKDHASTQTNLAKVDEVIGGFNGQFKTYSVCGTILRMGESDDSIL*LVKTN |
Parental | GIVSKNF |
.I.SKNF | |
Retrocopy | SI-SKNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4303 |
Gorilla gorilla | retro_ggor_2875 |
Macaca mulatta | retro_mmul_1138 |
Callithrix jacchus | retro_cjac_629 |