RetrogeneDB ID: | retro_pabe_986 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13:26368033..26368226(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000011205 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.67 % |
Parental protein coverage: | 78.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QNDAGEFVDLYVPRKCSASNRIIGAK-DHASIQMNV-AEVDKVTGRFNGQFKTYAICGAIRRMGESD |
QN.A.EFVDLY.P.KCS.SN..IGAK.DH.S.QMN....VD.V.GRFN..FKTY.I..AIR.MGES. | |
Retrocopy | QNNASEFVDLYIPWKCSTSNHVIGAK<DHTSMQMNM<GKVDQVMGRFNDPFKTYVIHRAIRGMGESE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .03 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1179 |
Gorilla gorilla | retro_ggor_917 |
Macaca mulatta | retro_mmul_1279 |
Callithrix jacchus | retro_cjac_2572 |