RetrogeneDB ID: | retro_cfam_28 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:23441675..23441927(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000007508 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000012676 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S21 [Source:UniProtKB/TrEMBL;Acc:E2RCL4] |
Percent Identity: | 93.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSIL |
MQNDAG.FVDLYVPRKCSASNRIIG.KDHASIQMNVAE.DKVTGRFNGQFKTYAICGAIRRMGESDDSIL | |
Retrocopy | MQNDAGKFVDLYVPRKCSASNRIIGTKDHASIQMNVAELDKVTGRFNGQFKTYAICGAIRRMGESDDSIL |
Parental | RLAKADGIVSKNF |
.LAKADGI.SKNF | |
Retrocopy | WLAKADGIISKNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 6 .13 RPM | 0 .00 RPM |
SRP017611_brain | 1 .59 RPM | 0 .00 RPM |
SRP017611_kidney | 11 .82 RPM | 0 .00 RPM |
SRP017611_liver | 3 .26 RPM | 0 .00 RPM |