Parental gene:

SUMO3, ENSCPOG00000025203

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_90:242293..250373(+)


>ENSCPOG00000025203
ATGTCCGAGGAGAAGCCCAAGGAGGGCGTGAAGACTGAGAACGACCACATCAACCTGAAGGTGGCAGGGCAGGATGGCTC
GGTGGTACAGTTCAAGATTAAGAGGCACACCCCGCTGAGCAAGCTGATGAAGGCCTACTGTGAGCGGCAGGGCTTGTCGA
TGAGACAGATTAGATTCAGGTTTGATGGGCAGCCCATTAATGAAACAGACACTCCAGCGCAGCTGGAGATGGAGGACGAA
GACACCATTGACGTGTTCCAGCAGCAGACGGGAGGTGCAGTCTCCAGAGGGACCATTCTGCACCCTGCATTCGCTGTGGA
ATGTTGCTGC

Library Parental gene expression (RPM)
SRP017611_liver 22 .11 RPM
SRP017611_kidney 28 .27 RPM
SRP017611_brain 27 .84 RPM
SRP040447_lung 54 .60 RPM
SRP040447_skeletal_muscle 29 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000017321 ortholog_one2one 3 retrogenes
retro_btau_1730, retro_btau_580, retro_btau_701,
Bos taurus ENSBTAG00000030169 possible_ortholog 8 retrogenes
retro_btau_1047, retro_btau_1484, retro_btau_1804, retro_btau_260, retro_btau_344, retro_btau_489, retro_btau_582, retro_btau_895,
Callithrix jacchus ENSCJAG00000010529 possible_ortholog 20 retrogenes
retro_cjac_1110, retro_cjac_1128, retro_cjac_1525, retro_cjac_1752, retro_cjac_1938, retro_cjac_1957, retro_cjac_1993, retro_cjac_2460, retro_cjac_2481, retro_cjac_2616, retro_cjac_2651, retro_cjac_2886, retro_cjac_2899, retro_cjac_2985, retro_cjac_3088, retro_cjac_3137, retro_cjac_4123, retro_cjac_711, retro_cjac_771, retro_cjac_774,
Cavia porcellus ENSCPOG00000004581 within_species_paralog 9 retrogenes
retro_cpor_1029, retro_cpor_1297, retro_cpor_1496, retro_cpor_202, retro_cpor_357, retro_cpor_823, retro_cpor_838, retro_cpor_869, retro_cpor_894,
Cavia porcellus ENSCPOG00000012143 within_species_paralog 1 retrogene
retro_cpor_1279,
Felis catus ENSFCAG00000026550 possible_ortholog 4 retrogenes
retro_fcat_1210, retro_fcat_1947, retro_fcat_823, retro_fcat_836,
Homo sapiens ENSG00000184900 ortholog_one2one 4 retrogenes
retro_hsap_1675, retro_hsap_1841, retro_hsap_3672, retro_hsap_4103,
Myotis lucifugus ENSMLUG00000025342 possible_ortholog 4 retrogenes
retro_mluc_1502, retro_mluc_272, retro_mluc_340, retro_mluc_625,
Myotis lucifugus ENSMLUG00000028601 possible_ortholog 2 retrogenes
retro_mluc_1321, retro_mluc_2494,
Macaca mulatta ENSMMUG00000006760 ortholog_one2many 3 retrogenes
retro_mmul_2131, retro_mmul_2215, retro_mmul_47,
Mustela putorius furo ENSMPUG00000010234 possible_ortholog 1 retrogene
retro_mputfur_1504,
Mustela putorius furo ENSMPUG00000013954 possible_ortholog 9 retrogenes
retro_mputfur_1086, retro_mputfur_1403, retro_mputfur_1535, retro_mputfur_273, retro_mputfur_275, retro_mputfur_385, retro_mputfur_666, retro_mputfur_948, retro_mputfur_995,
Mus musculus ENSMUSG00000020265 ortholog_one2one 1 retrogene
retro_mmus_3548,
Nomascus leucogenys ENSNLEG00000002351 ortholog_one2one 9 retrogenes
retro_nleu_1084, retro_nleu_1253, retro_nleu_1736, retro_nleu_2052, retro_nleu_21, retro_nleu_2128, retro_nleu_3039, retro_nleu_523, retro_nleu_572,
Oryctolagus cuniculus ENSOCUG00000021739 possible_ortholog 4 retrogenes
retro_ocun_1024, retro_ocun_1631, retro_ocun_1690, retro_ocun_321,
Otolemur garnettii ENSOGAG00000004715 ortholog_one2one 10 retrogenes
retro_ogar_1199, retro_ogar_1646, retro_ogar_1945, retro_ogar_2958, retro_ogar_328, retro_ogar_3469, retro_ogar_371, retro_ogar_419, retro_ogar_526, retro_ogar_967,
Rattus norvegicus ENSRNOG00000003670 possible_ortholog 2 retrogenes
retro_rnor_418, retro_rnor_67,
Rattus norvegicus ENSRNOG00000038489 ortholog_one2one 1 retrogene
retro_rnor_2158,
Ictidomys tridecemlineatus ENSSTOG00000010587 possible_ortholog 2 retrogenes
retro_itri_116, retro_itri_1259,
Ictidomys tridecemlineatus ENSSTOG00000024685 possible_ortholog 10 retrogenes
retro_itri_1017, retro_itri_1123, retro_itri_1355, retro_itri_202, retro_itri_264, retro_itri_272, retro_itri_79, retro_itri_921, retro_itri_981, retro_itri_983,
Takifugu rubripes ENSTRUG00000014892 possible_ortholog 1 retrogene
retro_trub_25,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_328 68.75 57.27
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2. retro_cpor_645 56.98 77.27
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3. retro_cpor_963 75.96 94.55
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Download FASTA sequences of all ENSCPOG00000025203 retrocopies