RetrogeneDB ID: | retro_cpor_1393 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_8:24699394..24700648(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSCPOG00000004067 | ||
Aliases: | None | ||
Description: | Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:H0V2B3] |
Percent Identity: | 76.71 % |
Parental protein coverage: | 90.04 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGIT |
..KTH..I.VI.H.DS.KSTT.GHLIYKCGGIDKRTIEK.E.EAAEMGK.SFKYAWVLDKLKA....GIT | |
Retrocopy | ERKTHVTIIVIEHMDSSKSTTAGHLIYKCGGIDKRTIEKCE-EAAEMGKDSFKYAWVLDKLKAKHACGIT |
Parental | IDISLWKFETSKY----YVTIIDAPGHRDFIK-NMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHA |
IDI.LWKFETSK.....YVT..DAPGHRDFIK..MI.GTSQADC.VL.V.AGV.EFEAGIS.NGQTREHA | |
Retrocopy | IDIALWKFETSKFM*LCYVTVTDAPGHRDFIK>YMIIGTSQADCDVLTVTAGVHEFEAGISNNGQTREHA |
Parental | LLAYTLGVKQLIVGVNKMDSTEPPYSQKR-YEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSA |
LLAYTLGVKQLIVGVNKMD.TEP.Y.QKR...EIVKE..TYIKK..YNP.TVAFV..S.WNGD..LE.SA | |
Retrocopy | LLAYTLGVKQLIVGVNKMDCTEPAYCQKR<IREIVKEARTYIKKMSYNPHTVAFVRTSVWNGDDLLETSA |
Parental | NMPWFK-GWKVTRKDGNASGTTLLEALDCILPPTRPTD-KPLRLPLQDVYKIGGIGTVPVGRVETGVLKP |
NM.WFK.GW....K.GN.SGTTLLEAL.CIL.PT.PTD..PL.L.LQDVY.IG.I.TVPVG.V.TG.LKP | |
Retrocopy | NMLWFK<GWTFICKHGNTSGTTLLEALGCILSPTFPTD<QPLQLLLQDVYGIGSICTVPVG*VMTGILKP |
Parental | GMVVTFAPVNVTTEVKSV-EMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ |
GMVVTFAPV.VTT.VKSV..MHH.A.SEALPGD.VGFNVKNVSV.DV..G.VA.DSKNDPPMEAAGF.AQ | |
Retrocopy | GMVVTFAPVSVTT*VKSV<LMHHKAWSEALPGDSVGFNVKNVSVEDV*HGSVARDSKNDPPMEAAGFIAQ |
Parental | VIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVE |
VIILNHP.QISAG.APVLDCHTAHIACKFAELK.KI...SGKKLE....FLKS.DAAI.D.VP..P.CVE | |
Retrocopy | VIILNHPSQISAGSAPVLDCHTAHIACKFAELKAKIGHCSGKKLESMLTFLKSCDAAIIDVVPDRPTCVE |
Parental | SFSDY |
SFSDY | |
Retrocopy | SFSDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .30 RPM | 855 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 1991 .99 RPM |
SRP017611_liver | 0 .00 RPM | 1852 .07 RPM |
SRP040447_lung | 0 .00 RPM | 3418 .91 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 830 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013249 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010051 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000004067 | 15 retrocopies | |
Dipodomys ordii | ENSDORG00000009629 | 1 retrocopy | |
Equus caballus | ENSECAG00000022260 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000000342 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000028081 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004852 | 15 retrocopies | |
Monodelphis domestica | ENSMODG00000018533 | 4 retrocopies | |
Mus musculus | ENSMUSG00000037742 | 15 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001476 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000018347 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007687 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000007637 | 9 retrocopies | |
Drosophila melanogaster | FBgn0000557 | 1 retrocopy |