RetrogeneDB ID: | retro_cpor_413 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_148:970655..971603(+) | ||
Located in intron of: | ENSCPOG00000007773 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSCPOG00000004067 | ||
Aliases: | None | ||
Description: | Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:H0V2B3] |
Percent Identity: | 53.7 % |
Parental protein coverage: | 68.61 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 6 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI-EKFEKEAAEMGKGSFKYAWVLDKLKAERER |
.GK.....N..VI.H.DSGKS.TT..L..KC..I.KRT..E...KEAAEM.K..FKY.WVL.KLK.E.E. | |
Retrocopy | LGKKQMPVNVFVIEHIDSGKSPTTDDLFGKCNVICKRTM<ENLKKEAAEMEKFYFKYPWVLAKLKSEHEC |
Parental | GITIDISL-WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADC-AVLIVAAGVGEFEAGISKNGQTREHA |
GITI.I...WK.E..KY.VTI.D..GH..F..NMI.....AD..AVL.VAA.V..FEA..S.N.Q....A | |
Retrocopy | GITINILFKWKLEARKY*VTITDVSGHKNFTINMIISAL*ADL<AVLTVAATVHGFEADVSENEQICDYA |
Parental | LLAYTLGVKQLIVGVNKMDSTEPPYSQKR-YEEIVKEVS-TYIKKIGYNPDTVAFVPISGWNGDNMLEPS |
LLAYTL.VKQLIVGVNK..STE.P.S....Y.E...EVS..Y.KK.GYN.....FV.IS.WN.....E.. | |
Retrocopy | LLAYTLTVKQLIVGVNKVNSTESP*S*NN<YKEKIREVS<PYSKKVGYNSSAITFVLISSWNDNSV*ELR |
Parental | ANMPWFKGWKVTRKDGNASGTTLLE-ALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKP |
..M.WFKGWKV..KD.NA....L....L..ILP....TDKP...PL..VY..G.I..V.V..V.T..L.. | |
Retrocopy | VDMSWFKGWKVLCKDSNANEIKLTH<SLAYILPIACLTDKPFYQPL*NVYIFGAISIVFVRQVDTSIL*L |
Parental | GMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVG-FNVKNVSV |
G.V..FA...VTTE.KSVEMH.EAL.E.LPG..V..F.VK.VSV | |
Retrocopy | GVVDMFALLHVTTEGKSVEMHNEALNEVLPG*MVS<FDVKSVSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 855 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 1991 .99 RPM |
SRP017611_liver | 0 .00 RPM | 1852 .07 RPM |
SRP040447_lung | 0 .03 RPM | 3418 .91 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 830 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013249 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010051 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000004067 | 15 retrocopies | |
Dipodomys ordii | ENSDORG00000009629 | 1 retrocopy | |
Equus caballus | ENSECAG00000022260 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000000342 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000028081 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004852 | 15 retrocopies | |
Monodelphis domestica | ENSMODG00000018533 | 4 retrocopies | |
Mus musculus | ENSMUSG00000037742 | 15 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001476 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000018347 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007687 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000007637 | 9 retrocopies | |
Drosophila melanogaster | FBgn0000557 | 1 retrocopy |