RetrogeneDB ID: | retro_cpor_370 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_134:2931436..2932360(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSCPOG00000003055 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.35 % |
Parental protein coverage: | 86.35 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 6 |
Parental | ESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQP-YAVSELAGHQTSAESWGTGRAVARIPRVRGGG- |
E.S..NVTL...FKAPI.PD.VNFVH..L..N..Q..YAVS.L...QTSA.SW.T.R.V.R.PRV.GGG. | |
Retrocopy | ELSS*NVTLSVTFKAPI*PDVVNFVHITLPTNKKQS<YAVSKLENQQTSAQSWMTARTVTRVPRVHGGG< |
Parental | THRSGQGA-FGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPL |
TH.S.Q.A.FGN....G..FAPT..W..W.R.V.TTQK.YAI.SALAASALP.L...KGHR.EEVPELPL | |
Retrocopy | THLSSQSA<FGNKY*EGCIFAPTQIWCCWQRKVYTTQKQYAIFSALAASALPVLLLWKGHRMEEVPELPL |
Parental | VVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRK-GPCIIYNEDNGIIKAF |
.VEDKVEGYKKTKEAV.LLKK.KA.ND.KK.Y.SQ.MRAGK.K.....RIQ.K.G.CIIYNEDNGIIK.F | |
Retrocopy | MVEDKVEGYKKTKEAVVLLKKRKAQNDYKKFYVSQPMRAGKSKEGTHCRIQSK<GFCIIYNEDNGIIKVF |
Parental | RNIPGITLLNVS-KLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSHYNLPMHKMINTDL- |
RNIPG.TLL.VS..LNI.K.AP.GHV..FCIWTESAF.KLD.L.GTWRKAATLKSHYNLPMHK..N.DL. | |
Retrocopy | RNIPGTTLLKVS<QLNIVKFAPCGHVRCFCIWTESAFWKLDVL*GTWRKAATLKSHYNLPMHKISNADL< |
Parental | SRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIM |
..I..S....R.L.AP..KIH.RVLKKNPLKNLRI. | |
Retrocopy | EKIMRSLDK*RTLQAPCMKIHHRVLKKNPLKNLRIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 238 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 386 .82 RPM |
SRP017611_liver | 0 .00 RPM | 210 .58 RPM |
SRP040447_lung | 0 .00 RPM | 367 .49 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 631 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005211 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000017309 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007491 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000003055 | 1 retrocopy |
retro_cpor_370 ,
|
Echinops telfairi | ENSETEG00000000337 | 3 retrocopies | |
Felis catus | ENSFCAG00000012293 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000003695 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000011809 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000016844 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000009657 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000000337 | 3 retrocopies | |
Mus musculus | ENSMUSG00000032399 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012938 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008794 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000007792 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006578 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009378 | 5 retrocopies |