RetrogeneDB ID: | retro_fcat_189 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:150241537..150242182(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000012293 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.28 % |
Parental protein coverage: | 51.18 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | CRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTK |
C.GG.M.A.TKTW...H..VNT..K.YAI.S..AASA.PALVMS..H..E..P...LVVE..VE.Y.KT. | |
Retrocopy | CGGGCMSAQTKTWCHCHCMVNTAHK*YAIRSSPAASAFPALVMSSCHPTEGTPGPFLVVEGTVEDYNKTT |
Parental | EAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPEGITLLNVSK |
..VLLLKKLKAW.D.KK..ASQ.MRAG.GKMR....I.RRGPC.IYNE...II..FRNIP.GITLLN.SK | |
Retrocopy | QVVLLLKKLKAWSDSKKFCASQQMRAGRGKMRSCCCIHRRGPCLIYNEGHHIINTFRNIP-GITLLNASK |
Parental | LNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALRA |
.NIL.L.PG.HVG.FCIWTESA.R.L..L.GT..KAASLKSNY.L.MHK.L.TD..RI..SPEIQR.L.A | |
Retrocopy | PNILELVPGEHVGHFCIWTESASRRLHNLHGT*HKAASLKSNYSLLMHKLLSTDVTRIW*SPEIQRDL*A |
Parental | PRKKIH |
P.K.IH | |
Retrocopy | PHKRIH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 345 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 1238 .75 RPM |
SRP017611_liver | 0 .00 RPM | 639 .80 RPM |