RetrogeneDB ID:

retro_fcat_505

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:A3:116193170..116193872(-)
Located in intron of:ENSFCAG00000005996
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000012293
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_505
AAAAATGTTACTTTGCCTGCTGTGTTCAGGGCTTTCATTTGACCTGATACCATGAACTTTGTTCGCATCAGCTTTTGCAG
AAACAACATATAGCCCTAAGCTGTTGGTGATTTAGCAGGTCGTCACCACCTGTCCTGAGTTTTGGGGTACTGGCAGAGCC
GTGGCTCAAATTCCCAGAGTTCGAGATGGTGGGACTCACTGTTCTGGCCAGGGTGCTTCTGGAAATATATGTCTTGCATA
TTTGGCCTGCATGTTTGTACCAAACAAAATGTGGCACCCTTGGTGCAGAGTGAACATAGCACAGAAGCGACAGGCCATCT
GCTCTGCCCTGGCTGCCTCAGGCCTACCAGCGCTGGTCATGTCTATACATCATCGTATTGAGGAAGTTCCCGAACTTCCT
TTGGTGGTTGAAGATATAGTTCAAGGCTACAAGACGACCAGAGAGGCTGTTTCGCTTCTTAAAATACTTAAAGCCTAGAA
TGATATCAGAAAGGTTATGCCTCTCAGCAAATGAGAGCTGGGAAGGACACAATGAGAAATTGTCATTGTATCCAGTGTAG
GGGACCCTGCATTATCTGTAATGAGGACAGTGGTATCATAAAGACCTTCAGAAATGCCCCTGCAATTACTTTACTTAATG
TAAGCAAACTGAACATCTTGAAACTTGCCCCTGGTGGGCATGCAGGACATTTCTGCATATTT

ORF - retro_fcat_505 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.17 %
Parental protein coverage: 55.45 %
Number of stop codons detected: 4
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQ-TSAESWGTGRAVARIPRVRGGGTHRSG
KNVTLPAVF.A.I.PD..NFV......NN..P.AV..LAG...T..E.WGTGRAVA.IPRVR.GGTH.SG
RetrocopyKNVTLPAVFRAFI*PDTMNFVRISFCRNNI*P*AVGDLAGRH>TCPEFWGTGRAVAQIPRVRDGGTHCSG
ParentalQGAFGNMCRG--GRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVED
QGA.GN.C......MF.P.K.W..W.R.VN..QKR.AICSALAAS.LPALVMS..HRIEEVPELPLVVED
RetrocopyQGASGNICLAYLACMFVPNKMWHPWCR-VNIAQKRQAICSALAASGLPALVMSIHHRIEEVPELPLVVED
ParentalKVEGYKKTKEAVLLLKKLKAWNDIKKV-YASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIP
.V.GYK.T.EAV.LLK.LKA.NDI.KV.YASQ.MRAGK..MRN...IQ.RGPCII.NED.GIIK.FRN.P
RetrocopyIVQGYKTTREAVSLLKILKA*NDIRKV<YASQQMRAGKDTMRNCHCIQCRGPCIICNEDSGIIKTFRNAP
ParentalEGITLLNVSKLNILKLAPGGHVGRFCIW
..ITLLNVSKLNILKLAPGGH.G.FCI.
Retrocopy-AITLLNVSKLNILKLAPGGHAGHFCIF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 345 .81 RPM
SRP017611_kidney 0 .00 RPM 1238 .75 RPM
SRP017611_liver 0 .00 RPM 639 .80 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_505 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_505 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 31 parental genes, and 112 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000052112 retrocopies
Canis familiaris ENSCAFG000000173091 retrocopy
Choloepus hoffmanni ENSCHOG000000030086 retrocopies
Callithrix jacchus ENSCJAG000000074912 retrocopies
Cavia porcellus ENSCPOG000000030551 retrocopy
Dasypus novemcinctus ENSDNOG000000066933 retrocopies
Equus caballus ENSECAG000000231791 retrocopy
Echinops telfairi ENSETEG000000003373 retrocopies
Felis catus ENSFCAG00000012293 4 retrocopies
Homo sapiens ENSG000001744445 retrocopies
Gorilla gorilla ENSGGOG000000036954 retrocopies
Loxodonta africana ENSLAFG000000064943 retrocopies
Microcebus murinus ENSMICG000000044196 retrocopies
Myotis lucifugus ENSMLUG000000118092 retrocopies
Macaca mulatta ENSMMUG000000168442 retrocopies
Monodelphis domestica ENSMODG000000096572 retrocopies
Mustela putorius furoENSMPUG000000003373 retrocopies
Mus musculus ENSMUSG000000323992 retrocopies
Nomascus leucogenys ENSNLEG000000129384 retrocopies
Oryctolagus cuniculus ENSOCUG000000087943 retrocopies
Ochotona princeps ENSOPRG000000077921 retrocopy
Pongo abelii ENSPPYG000000065781 retrocopy
Pan troglodytes ENSPTRG000000071956 retrocopies
Pteropus vampyrus ENSPVAG0000000006818 retrocopies
Rattus norvegicus ENSRNOG000000093785 retrocopies
Sus scrofa ENSSSCG000000049452 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000092211 retrocopy
Tupaia belangeri ENSTBEG000000143929 retrocopies
Tarsius syrichta ENSTSYG000000055881 retrocopy
Tursiops truncatus ENSTTRG000000102067 retrocopies
Vicugna pacos ENSVPAG000000067462 retrocopies



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