RetrogeneDB ID: | retro_rnor_2061 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:134953974..134955189(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl4 | ||
Ensembl ID: | ENSRNOG00000009378 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L4 [Source:RefSeq peptide;Acc:NP_071955] |
Percent Identity: | 67.96 % |
Parental protein coverage: | 96.91 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | SEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRG |
S.KGESSGKNVTL..VFKAPI..DIVNFVH.....N.RQPY..SE...HQT..ESW..G.A.A.IPRV.G | |
Retrocopy | SKKGESSGKNVTLLSVFKAPI*LDIVNFVHPYVK*NSRQPYVISEFIDHQTRTESWCPGKAMAQIPRV*G |
Parental | GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRVEEVPELP |
.GTH.SGQGAFGNMC.G..M.AP.KT...WH....TTQKR.AICSAL.AS.LPA..MSKGH..E.V..L. | |
Retrocopy | VGTHCSGQGAFGNMCHGCCMLAPNKT---WHYSMKTTQKRWAICSALVASVLPATMMSKGHCIEKVAKLS |
Parental | LVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAF |
L.VEDKV..YKK.KEAVQ..K.LKAWNDI.KVYA.QRMRAG.GKMRN...IQ.RG.CIIY.ED.GIIKAF | |
Retrocopy | LLVEDKVKDYKKSKEAVQVNKSLKAWNDINKVYATQRMRAGNGKMRNQWLIQSRGTCIIY*EDHGIIKAF |
Parental | RNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD-ELYGTWRKAASLKSNYNLPMHKMMNTDLS |
RNIP.ITLLNVSKL.ILK.A...HVG..CI.TESAF.KL...L.G.W.KAASLKSNYN.PMHKM.NT.L. | |
Retrocopy | RNIPAITLLNVSKLDILKVALSEHVGCLCICTESAFQKLE<DLNGSWLKAASLKSNYNFPMHKMVNTNLN |
Parental | RILKSPEIQRALRAPRKKIQRRVLK-KNPLKNLR-IMLKLNPYA-KTMRRNTILRQARNHKLRVKKLEAA |
RILK.PEIQRAL.AP.KKIQ..VLK...PLKNLR.......P.A.KTM.R.T.L...R..KL.VK.LEAA | |
Retrocopy | RILKIPEIQRAL*APHKKIQHKVLK<NSPLKNLR>TFVEAEPLA>KTMCRSTTLHKGRHYKLWVKTLEAA |
Parental | AAALAAKSEKIVPEKGAGDKKPAVGKKGKKPVDAKKLKKPAGKKVVTKKPAEKKPTTEEKKS |
AA.LAAK.EK...E....DKKPAVGKK.KKPVD.KK.K.PA...VVTKKPAEKKP.TE.K.S | |
Retrocopy | AAVLAAKLEKLAAERETVDKKPAVGKKEKKPVDVKKQKNPAREEVVTKKPAEKKPPTEGKRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 247 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 302 .58 RPM |
SRP017611_liver | 0 .00 RPM | 292 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_2863 |