RetrogeneDB ID: | retro_mmul_649 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:84505671..84506521(-) | ||
Located in intron of: | ENSMMUG00000031019 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.11090 | ||
Ensembl ID: | ENSMMUG00000016844 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L4 [Source:RefSeq peptide;Acc:NP_001253129] |
Percent Identity: | 69.1 % |
Parental protein coverage: | 66.74 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK-RYAICSALAASALPAL |
GTGR....IPRV.GGGTH.SGQGAFGN.C.GG.MFA.TKTW..WH.RVNT.QK.RYAICS.L.ASALP.L | |
Retrocopy | GTGRVGSHIPRV*GGGTHCSGQGAFGNICHGGHMFAATKTWHCWHCRVNTAQK>RYAICSPLGASALPVL |
Parental | VMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRG |
VMSKGH.I.EVPEL.LVV.DKVEGYK..KEAVLL.KKLKAW.D.KK.Y.SQ.MRAGKGKMRN...IQ.RG | |
Retrocopy | VMSKGHHIKEVPELFLVVRDKVEGYKTIKEAVLLRKKLKAWSDTKKGYTSQQMRAGKGKMRNHC-IQHRG |
Parental | PCIIYNEDNGIIKAFRNIPGITLLN-VSKLNILKLAPGGHVGRFCIWTESAFRKLD-ELYGTWRKAASLK |
PCI.YNED..I.K..RNIPGITLLN.VSKLNILKLAP.GHVGRFCIWTES.F.KL..EL.GTW.KAAS.. | |
Retrocopy | PCIVYNEDDHIVKSLRNIPGITLLN>VSKLNILKLAPDGHVGRFCIWTESSF*KLE<ELCGTWCKAASSR |
Parental | SNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQA |
.....P........L....K......AL.A...KIH.RVL.KN.L.NLRIMLKLNP.AKTM..NTIL.Q. | |
Retrocopy | VTAVFPCTR*SIQTLAESWKA-QTSKALQARCRKIHCRVLRKNLLENLRIMLKLNPCAKTMQ*NTILCQS |
Parental | RNHKLRVD |
.NHKLR.. | |
Retrocopy | SNHKLRLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 231 .16 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 260 .52 RPM |
SRP007412_cerebellum | 0 .13 RPM | 279 .16 RPM |
SRP007412_heart | 0 .12 RPM | 316 .75 RPM |
SRP007412_kidney | 0 .12 RPM | 342 .25 RPM |
SRP007412_liver | 0 .00 RPM | 285 .48 RPM |
SRP007412_testis | 0 .53 RPM | 168 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1512 |