Parental gene:

RPL4, ENSBTAG00000005211

Aliases:None
Description:60S ribosomal protein L4 [Source:UniProtKB/Swiss-Prot;Acc:Q58DW0]
Organism:Cow (Bos taurus)
Coordinates:10:13318874..13323526(-)


>ENSBTAG00000005211
ATGGCGTGTGCTCGTCCACTGATATCAGTGTACTCCGAAAAGGGGGAGTCCTCTGGCAAAAATGTCACTTTGCCTGCTGT
GTTCAAGGCTCCCATTCGACCCGATATTGTTAACTTTGTTCACACCAACTTGCGCAAAAACAACAGACAGCCCTATGCTG
TCAGTGAATTAGCAGGTCATCAAACCAGTGCTGAGTCTTGGGGTACCGGCAGAGCTGTGGCTCGAATTCCCAGGGTTCGA
GGTGGCGGGACTCACCGTTCCGGTCAGGGCGCTTTTGGAAACATGTGTCGTGGGGGCCGCATGTTTGCGCCAACTAAGAC
CTGGCGACGTTGGCACCGCAGAGTGAATACGACGCAGAAGCGATACGCCATCTGCTCTGCACTGGCTGCCTCAGCCTTAC
CAGCGCTGGTCATGTCTAAAGGTCATCGTATAGAGGAAGTTCCTGAACTTCCTTTGGTGGTGGAAGATAAAGTTGAAGGC
TACAAGAAGACCAAGGAGGCTGTGTTGCTTCTGAAGAAACTTAAGGCCTGGAATGATATCAAAAAGGTCTATGCCTCTCA
GCGAATGAGAGCTGGCAAAGGCAAGATGAGAAACCGTCGCCGTATCCAGCGCAGGGGACCCTGCATCATCTATAATGAGG
ACAATGGTATCATCAAGGCCTTCAGAAACATCCCTGGAATTACTCTGCTTAATGTAAGCAAGCTGAACATTTTGAAACTT
GCTCCTGGTGGTCACGTGGGACGTTTCTGCATTTGGACTGAAAGTGCTTTCCGAAAGTTAGATGAGCTATATGGCACTTG
GCGTAAAGCAGCCTCCCTCAAGAGTAACTACAACCTCCCTATGCACAAGATGCTCAATACAGACCTTAGCAGAATCTTGA
AAAGCCCAGAAATCCAAAGAGCACTCCGAGCACCACGCAAGAAGATTCATCGCAGAGTCCTGAAGAAGAATCCACTGAAA
AACCTGAGAATCATGTTGAAGCTTAATCCATATGCAAAGACCATGCGCAGGAACACCATTCTTCGACAGGCCAGGAATCA
CAAAATCCGCATGGATAAGGCAGCAGCAGCACTAGAAGCCAAATCAGATCAGAAAGGGGTTCAGGGCAAGAAGCCTGTGG
TGGGAAACAAGGAAAAGAAGGCTGTTGGCGATAAGAAGCTGAAGAAGCCTGTGGTGGGAAAAAAGGCTGCAGGGACCAAG
AAACCAGCAGCTGAAAAGAAGCCCACAGAAAAGAAACCCACCTCAGAGGAAAAGAAGGCTGCTGCGTAA

Library Parental gene expression (RPM)
SRP017611_brain 289 .65 RPM
SRP017611_kidney 645 .29 RPM
SRP017611_liver 337 .22 RPM
ERP005899_muscle 2073 .82 RPM
ERP005899_liver 490 .76 RPM
SRP030211_testis 182 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017309 ortholog_many2many 1 retrogene
retro_cfam_72,
Choloepus hoffmanni ENSCHOG00000003008 ortholog_one2many 6 retrogenes
retro_chof_1014, retro_chof_1496, retro_chof_2219, retro_chof_2616, retro_chof_455, retro_chof_476,
Callithrix jacchus ENSCJAG00000007491 ortholog_many2many 2 retrogenes
retro_cjac_251, retro_cjac_945,
Cavia porcellus ENSCPOG00000003055 possible_ortholog 1 retrogene
retro_cpor_370,
Dasypus novemcinctus ENSDNOG00000006693 ortholog_one2many 3 retrogenes
retro_dnov_1028, retro_dnov_1152, retro_dnov_1931,
Equus caballus ENSECAG00000023179 ortholog_one2many 1 retrogene
retro_ecab_428,
Echinops telfairi ENSETEG00000000337 ortholog_many2many 3 retrogenes
retro_etel_1876, retro_etel_2195, retro_etel_226,
Felis catus ENSFCAG00000012293 ortholog_many2many 4 retrogenes
retro_fcat_1136, retro_fcat_189, retro_fcat_505, retro_fcat_567,
Homo sapiens ENSG00000174444 ortholog_one2many 5 retrogenes
retro_hsap_1306, retro_hsap_254, retro_hsap_2898, retro_hsap_4229, retro_hsap_471,
Gorilla gorilla ENSGGOG00000003695 ortholog_many2many 4 retrogenes
retro_ggor_1023, retro_ggor_2008, retro_ggor_2831, retro_ggor_304,
Loxodonta africana ENSLAFG00000006494 ortholog_one2many 3 retrogenes
retro_lafr_1076, retro_lafr_152, retro_lafr_960,
Microcebus murinus ENSMICG00000004419 ortholog_one2many 6 retrogenes
retro_mmur_1050, retro_mmur_1330, retro_mmur_440, retro_mmur_562, retro_mmur_830, retro_mmur_852,
Myotis lucifugus ENSMLUG00000011809 ortholog_many2many 2 retrogenes
retro_mluc_121, retro_mluc_198,
Macaca mulatta ENSMMUG00000016844 ortholog_many2many 2 retrogenes
retro_mmul_2160, retro_mmul_649,
Monodelphis domestica ENSMODG00000009657 ortholog_one2many 2 retrogenes
retro_mdom_656, retro_mdom_944,
Mustela putorius furo ENSMPUG00000000337 ortholog_many2many 3 retrogenes
retro_mputfur_1205, retro_mputfur_411, retro_mputfur_570,
Mus musculus ENSMUSG00000032399 possible_ortholog 2 retrogenes
retro_mmus_2863, retro_mmus_495,
Nomascus leucogenys ENSNLEG00000012938 ortholog_one2many 4 retrogenes
retro_nleu_1041, retro_nleu_1062, retro_nleu_2385, retro_nleu_887,
Oryctolagus cuniculus ENSOCUG00000008794 possible_ortholog 3 retrogenes
retro_ocun_1134, retro_ocun_630, retro_ocun_631,
Ochotona princeps ENSOPRG00000007792 possible_ortholog 1 retrogene
retro_opri_735,
Pongo abelii ENSPPYG00000006578 ortholog_many2many 1 retrogene
retro_pabe_152,
Pan troglodytes ENSPTRG00000007195 ortholog_one2many 6 retrogenes
retro_ptro_1512, retro_ptro_1959, retro_ptro_214, retro_ptro_2873, retro_ptro_353, retro_ptro_897,
Pteropus vampyrus ENSPVAG00000000068 ortholog_one2many 18 retrogenes
retro_pvam_1222, retro_pvam_1342, retro_pvam_201, retro_pvam_202, retro_pvam_216, retro_pvam_236, retro_pvam_267, retro_pvam_399, retro_pvam_428, retro_pvam_430, retro_pvam_435, retro_pvam_466, retro_pvam_518, retro_pvam_736, retro_pvam_778, retro_pvam_819, retro_pvam_865, retro_pvam_955,
Rattus norvegicus ENSRNOG00000009378 possible_ortholog 5 retrogenes
retro_rnor_1192, retro_rnor_1621, retro_rnor_2061, retro_rnor_2484, retro_rnor_949,
Sus scrofa ENSSSCG00000004945 ortholog_one2many 2 retrogenes
retro_sscr_138, retro_sscr_885,
Ictidomys tridecemlineatus ENSSTOG00000009221 ortholog_one2many 1 retrogene
retro_itri_437,
Tupaia belangeri ENSTBEG00000014392 ortholog_one2many 9 retrogenes
retro_tbel_1701, retro_tbel_2186, retro_tbel_2649, retro_tbel_3302, retro_tbel_3577, retro_tbel_3624, retro_tbel_3938, retro_tbel_4340, retro_tbel_4402,
Tarsius syrichta ENSTSYG00000005588 ortholog_one2many 1 retrogene
retro_tsyr_1144,
Tursiops truncatus ENSTTRG00000010206 ortholog_one2many 7 retrogenes
retro_ttru_1130, retro_ttru_1399, retro_ttru_1713, retro_ttru_177, retro_ttru_789, retro_ttru_817, retro_ttru_964,
Vicugna pacos ENSVPAG00000006746 ortholog_one2many 2 retrogenes
retro_vpac_143, retro_vpac_250,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_101 95.97 100.00
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2. retro_btau_610 76.01 81.75
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Download FASTA sequences of all ENSBTAG00000005211 retrocopies