RetrogeneDB ID: | retro_dnov_1051 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_141310:1279..1758(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRTO4 | ||
Ensembl ID: | ENSDNOG00000010119 | ||
Aliases: | None | ||
Description: | mRNA turnover 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18477] |
Percent Identity: | 72.67 % |
Parental protein coverage: | 66.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SPSDEYKDNLHQVSKKLRGEVGLL-FTNRTKQEVNEWFMKYTEMDYARAGNKAIFTVSLDPGPLEQFPHS |
SPSD.Y..N.HQVSKK..GEV.LL.FT.R.KQEV.EWF.K.TEMDY...GNKA...VS.DPG.LEQFPH. | |
Retrocopy | SPSDNYRGNPHQVSKKWWGEVDLL<FTYRSKQEVTEWFTKNTEMDYTQSGNKATLMVSPDPGLLEQFPHC |
Parental | MEPQLRQLGLPTALKRGVMTLLSDYEMCKEGDVLTPEQARILKLFGYEMAEFKVTIKYMWDAQSGRFEQM |
M..QL.QL.LPTALKRGV.TLL...EM.K.G.VLTPEQA.ILKLF..EMAEFKVTIKYMWDAQSGRF..M | |
Retrocopy | MLLQLKQLSLPTALKRGVVTLLPNSEMHKMGGVLTPEQAQILKLFR*EMAEFKVTIKYMWDAQSGRFKLM |
Parental | GDDLPESASESAEESEDEDSD |
GDDLPE.ASE.A.ESE.ED.. | |
Retrocopy | GDDLPERASELAGESEEEDGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 13 .22 RPM |
SRP012922_cerebellum | 0 .00 RPM | 12 .23 RPM |
SRP012922_heart | 0 .00 RPM | 7 .89 RPM |
SRP012922_kidney | 0 .00 RPM | 10 .40 RPM |
SRP012922_liver | 0 .00 RPM | 6 .04 RPM |
SRP012922_lung | 0 .00 RPM | 12 .22 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 14 .19 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .28 RPM |