RetrogeneDB ID: | retro_itri_1551 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393537.1:550482..551125(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRTO4 | ||
Ensembl ID: | ENSSTOG00000028112 | ||
Aliases: | None | ||
Description: | mRNA turnover 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18477] |
Percent Identity: | 75.58 % |
Parental protein coverage: | 89.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHS-RMFFGKNKVMMVALGRSPSDEYKDNLHQVS |
.......KCVD.YKYLFIFSVANM.NSKLKDIRN.WKH....FFGK.KVM...LGR..SD...D.L.Q.S | |
Retrocopy | SVVPKIWKCVDIYKYLFIFSVANMKNSKLKDIRNTWKHG<LTFFGKSKVMRWVLGRNLSDKDRDSLYQMS |
Parental | KKLRGEVGLLFTNRTKEEVNEWFTKYTEMDF-ARAGNKATFTVSLDPGPLEQFPHSMEPQLRQLGLPTAL |
KKLRGEVGL.FT..TKEE.NEWFTKYTEMD..A..GNKATFT.SLDPGP.EQFPHS.EPQLR..GLP.AL | |
Retrocopy | KKLRGEVGLFFTDHTKEEMNEWFTKYTEMDL<ASSGNKATFTLSLDPGPQEQFPHSTEPQLR*RGLPIAL |
Parental | KRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVTVKYMWDAQSGRFQQMGDDLPESASESSEE |
KRGVVTLLSDY.VC..GDVLT.EQA.VLKLFGYEMAEFKVT.KY.WD.QSG.FQQMGDD..E.ASESSEE | |
Retrocopy | KRGVVTLLSDYQVCTKGDVLTLEQACVLKLFGYEMAEFKVTAKYTWDVQSGSFQQMGDDFSECASESSEE |
Parental | SEDDEDD |
SED.EDD | |
Retrocopy | SEDNEDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |