RetrogeneDB ID: | retro_etel_2177 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_8874:2803..3405(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRTO4 | ||
Ensembl ID: | ENSETEG00000001675 | ||
Aliases: | None | ||
Description: | mRNA turnover 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18477] |
Percent Identity: | 81.28 % |
Parental protein coverage: | 83.82 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | TYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSRKLKGEVGLLFT |
T.KYLFIFSVANMRNSKLKDI.N..KHSR...GKN.VMMVALGR.PSDEY.DNLHQVSRKL.GEVGLLF. | |
Retrocopy | TSKYLFIFSVANMRNSKLKDIQNT*KHSRCSLGKNTVMMVALGRNPSDEYIDNLHQVSRKL*GEVGLLFS |
Parental | NRTKEEVNEWFTKFTEMDYARAGNKASFSVSLDPGPLEQFPHSMEPQLRQLGLPTTLKKGVVTLLSDYEV |
.RTKE.VNEWFTKFT.MDYA.A.NKA.FSVSLDPGPLEQFPHSMEPQ.RQL.LPT.LKKGVVT.LSDY.. | |
Retrocopy | YRTKEDVNEWFTKFTAMDYAQASNKAAFSVSLDPGPLEQFPHSMEPQRRQLNLPTALKKGVVTVLSDYDM |
Parental | CKEGDVLTPEQARVLKLFGYEMAEFKVTIRYMWDAQSGRFA-QMGDDDLPESADESAEESAED |
CK.G.VLTP.QAR.LKLFGYEMAEFKVTIRYM.DAQSGRF...MG.DD.PESA.ESAE.S..D | |
Retrocopy | CKKGNVLTP*QARILKLFGYEMAEFKVTIRYMGDAQSGRFG<HMG-DDRPESAEESAEDSEDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |