RetrogeneDB ID: | retro_dnov_1890 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_35517:4067..4681(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRTO4 | ||
Ensembl ID: | ENSDNOG00000010119 | ||
Aliases: | None | ||
Description: | mRNA turnover 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18477] |
Percent Identity: | 85.02 % |
Parental protein coverage: | 86.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LRKCVDTYKY-LFIFSVANMRNSKLKDIRDAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRG |
LRKCVDTYKY.LFIFSVANMRNSKLKDI.DAWKHS...FGKNKVMMVALGRSPSDEYKDNLHQVSKKLRG | |
Retrocopy | LRKCVDTYKY<LFIFSVANMRNSKLKDIWDAWKHSQTVFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRG |
Parental | EVGLLFTNRTKQEVNEWFMKYTEMDYARAGNKAIFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVMT |
EVGLLFTNR.KQEVNEWFMKYTEMDYARAGNKAIFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGV.T | |
Retrocopy | EVGLLFTNRSKQEVNEWFMKYTEMDYARAGNKAIFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVT |
Parental | LLSDYEMCKEGDVLTPEQARILKLFGYEMAEFKVTIKYMWDAQSGRFEQMGDDLPESASESAEESED |
LLS.YE.CKEG.VLTPEQARILKLFGYEMAEFKVTIKYM...Q............ESA..S..E..D | |
Retrocopy | LLSNYEVCKEGAVLTPEQARILKLFGYEMAEFKVTIKYM*RFQQ-MGDDLLESASESAEASEDEDSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 13 .22 RPM |
SRP012922_cerebellum | 0 .00 RPM | 12 .23 RPM |
SRP012922_heart | 0 .00 RPM | 7 .89 RPM |
SRP012922_kidney | 0 .00 RPM | 10 .40 RPM |
SRP012922_liver | 0 .00 RPM | 6 .04 RPM |
SRP012922_lung | 0 .15 RPM | 12 .22 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 14 .19 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .28 RPM |