RetrogeneDB ID: | retro_tbel_1189 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4052:259076..259477(+) | ||
Located in intron of: | ENSTBEG00000013769 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRTO4 | ||
Ensembl ID: | ENSTBEG00000006502 | ||
Aliases: | None | ||
Description: | mRNA turnover 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18477] |
Percent Identity: | 65.49 % |
Parental protein coverage: | 94.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | EVGLLFTR-TKEEVNEWFTKYAEMDYARAGNKAAFTVSLDPG-PLEQFPHSMEPQLRQ-LGLPTALKRGV |
EVGLLF...T.EEVNE..T.Y.EMD...AGNKAAF.VSLDP..PL.QFPHS..PQLRQ..G.PTA.KRGV | |
Retrocopy | EVGLLFSNHTDEEVNE*LTRYMEMDHSQAGNKAAFPVSLDPS<PLKQFPHSVCPQLRQ<AGPPTAPKRGV |
Parental | VTLLSDYEVCKEGDVLTPEQARVLKLFGY-EMAEFKVTM-KYVW-DAQSGRFQQVGDDMPESSESAGESE |
.TLLSD..VC....VLTPEQAR.LKLF...E.AEF.VT...Y.W..AQSGR.QQV.DD.PES.ESA...E | |
Retrocopy | MTLLSDSQVCR---VLTPEQARFLKLFWHDEVAEF*VTV<EYMW<GAQSGRHQQVEDDSPESPESAQSAE |
Parental | DA |
.. | |
Retrocopy | ES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |