RetrogeneDB ID: retro_dnov_2177

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_52959:9370..10128(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BZW2
• Ensembl ID: ENSDNOG00000001663
• Aliases: None
• Description: basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808]

Sequence

>retro_dnov_2177
AAGTTTATGGACTCTACAGGCTCAAAGATTAGATTATCTTTGCTATACAGACACACTCTTCAATATCCTGGTGGGCTGGC
AGTCTGCTGGCCCCTGGAAGAAACACGCAGTGATGATGGTGACAAGACTGAGATGAGCAACCACTGTGTGTTTTCAGCAA
ATGAAGATCATGAAACCATCTGAAACTCTGCTCAGACCTTCAATAAACTCATCAGGAGATACAAGTATTTGGAAAAGGTA
TTTGAAAATGGAATGAAAAAGCTTCCCCTCTCCCTTAAAGCCTTTTCTGGAACCAAACAGACAAAATTGGCAATATTGTC
GGGGATCCTGCTGGACAACGGCACTCTTCCTGCCACCATTCTCACCAGTCTCTTCACTGACAACTTAGTCAAAGAAGACA
TCGTGGCCTCATTTGCTATCAAGCTTTTTAAAGCAGGGATGGCAGAAAAAGAATGCCAACCCTGTTATCTCCTCTTTGAA
AAAAAGCCAGCATAGACAAAAGGCTGCTTGAACTCTTTCCAGCTAACAGACAGAGCGTGGATCATTTTGCTAAATATTTC
ACTGACGCAGGTTTGAAGGAGCTTTCTGACTTCCTCCAAGACCAGCAGTCCCTGGGCACCTGGAAAGAACTCTGGAAGCT
GCTCAAGGAGCATCCTTCTCAGGAATGCCCAATCAAGGAGATGGTGCTCTGTGTCAAAGAAGAAATGAAGAGGAATGGTC
TCTCAGAAACAGCAGTGATTGGACTTCTGTGGACCTGT

Alignment

ORF - retro_dnov_2177 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.86 %
• Parental protein coverage: 59.81 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  KFLDSTGS-RLDYRRYADTLFDILV-AGSMLAPGG-TRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFN
          KF.DSTGS.RLDY..Y.DTLF.ILV.AGS.LAPG..TR.DDGDKT.M.NHCVFSANEDHETI.N.AQ.FN
Retrocopy KFMDSTGS>RLDYLCYTDTLFNILV>AGSLLAPGR>TRSDDGDKTEMSNHCVFSANEDHETI*NSAQTFN

Parental  KLIRRYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDNLVKEGIAASF
          KLIRRYKYLEK.FE..MKKL.L.LKAFS.T.QTKLA.LSGILL.NGTLPATILTSLFTDNLVKE.I.ASF
Retrocopy KLIRRYKYLEKVFENGMKKLPLSLKAFSGTKQTKLAILSGILLDNGTLPATILTSLFTDNLVKEDIVASF

Parental  AVKLFKAWMAEKD-ANSVTSSL-RKANIDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGT
          A.KLFKA.MAEK..AN.V.SSL..KA.IDKRLLELFP.NRQSVDHFAKYFTDAGLKELSDFL..QQSLGT
Retrocopy AIKLFKAGMAEKE>ANPVISSL>KKASIDKRLLELFPANRQSVDHFAKYFTDAGLKELSDFLQDQQSLGT

Parental  RKELQKELQERLSQECPIKEMVLYVKEE-KRNDLPETAVIGLLWTC
          .KEL.K.L.E..SQECPIKEMVL.VKEE.KRN.L.ETAVIGLLWTC
Retrocopy WKELWKLLKEHPSQECPIKEMVLCVKEEMKRNGLSETAVIGLLWTC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	0.00 RPM	61.45 RPM
SRP012922_cerebellum	0.00 RPM	11.41 RPM
SRP012922_heart	0.00 RPM	224.84 RPM
SRP012922_kidney	0.00 RPM	10.95 RPM
SRP012922_liver	0.00 RPM	9.13 RPM
SRP012922_lung	0.00 RPM	38.94 RPM
SRP012922_quadricep_muscle	0.00 RPM	261.36 RPM
SRP012922_spleen	0.00 RPM	41.55 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_2177 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001663	4 retrocopies	retro_dnov_2177 , retro_dnov_2422, retro_dnov_2649, retro_dnov_575,
Equus caballus	ENSECAG00000022038	1 retrocopy	retro_ecab_1121,
Macaca mulatta	ENSMMUG00000017045	1 retrocopy	retro_mmul_1457,
Ochotona princeps	ENSOPRG00000005256	2 retrocopies	retro_opri_665, retro_opri_9,
Pongo abelii	ENSPPYG00000017763	1 retrocopy	retro_pabe_2385,
Pteropus vampyrus	ENSPVAG00000014571	1 retrocopy	retro_pvam_481,
Ictidomys tridecemlineatus	ENSSTOG00000002506	1 retrocopy	retro_itri_1286,
Tarsius syrichta	ENSTSYG00000009806	1 retrocopy	retro_tsyr_1923,
Tursiops truncatus	ENSTTRG00000009867	1 retrocopy	retro_ttru_162,