RetrogeneDB ID: | retro_itri_1286 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393428.1:2472220..2473081(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BZW2 | ||
Ensembl ID: | ENSSTOG00000002506 | ||
Aliases: | None | ||
Description: | basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808] |
Percent Identity: | 73.17 % |
Parental protein coverage: | 99.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVKLFK-AWMAEKDAN |
.KKLLLFLK.FSE.E..KLAML.G.LL.NGTL.A.IL.SL....LVKEG..A.FAVKLFK..W..EKD.N | |
Retrocopy | VKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKKSWINEKDIN |
Parental | SVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECP |
.V..SLRK...D.RL.ELFP.N.QSV.HF.KYFT.AGLKELS...R.QQ..G.RKELQKELQE..S...P | |
Retrocopy | AVSASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDP |
Parental | IKEVVLYVKEEMKRNDIPETAVIGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELI |
.K...LYVKEEMKRN.IPE..VIG..W...M..VEWNKKEELVAEQA.KHLKQY.PLLA.F..QGQ.EL. | |
Retrocopy | FKDIILYVKEEMKRNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFTTQGQFELT |
Parental | LLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEE |
LL.K.QEYCYDNIHFMKAFQKIVVLFYKA.VLSEE.ILKWYK.AHVAKGKSVFL.QMKKFVEWL.NAEEE | |
Retrocopy | LLLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEE |
Parental | SESEGEE |
SESE.EE | |
Retrocopy | SESEAEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001663 | 4 retrocopies | |
Equus caballus | ENSECAG00000022038 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017045 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005256 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017763 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014571 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002506 | 1 retrocopy |
retro_itri_1286 ,
|
Tarsius syrichta | ENSTSYG00000009806 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009867 | 1 retrocopy |