RetrogeneDB ID: | retro_mmul_1457 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:114603317..114604083(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4082 | ||
Ensembl ID: | ENSMMUG00000017045 | ||
Aliases: | None | ||
Description: | basic leucine zipper and W2 domain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001181788] |
Percent Identity: | 64.45 % |
Parental protein coverage: | 60.86 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LPATILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKY |
L...IL.SL....LVKEG..A.FAVKLFK....EKD.N.V.SSLRK...D..L.EL.P.N.QS..HF.KY | |
Retrocopy | LMTSILNSLYNENLVKEGVSAAFAVKLFKS*INEKDINAVASSLRKVSMDNSLMELLPANKQSIKHFTKY |
Parental | FTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLPETA-VIGLLWTCIM |
FT.AGLKELS...R..QS....KELQKELQE..S...P.K...LYVKEEM....LP.T..VI...W...M | |
Retrocopy | FTEAGLKELSEYVRN*QSIRACKELQKELQEQMSRGDPFKDIILYVKEEMXXXQLPRTS>VIKTVWSNVM |
Parental | NAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELILLQKVQEYCYDNIHFMKAFQKIVVLFYKADV |
..VE.NKKEELVA.Q..KHLKQY..LLA.F..QGQSE..L..K.QEYCYDNIHFMKAFQKIVVLFYKA.. | |
Retrocopy | RSVECNKKEELVAQQTVKHLKQYSTLLAAFTTQGQSEPTL*LKIQEYCYDNIHFMKAFQKIVVLFYKAVI |
Parental | LSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEE |
LSEE.ILKWYK..HVAKGKSVFL.QM.KF.EW..N.EE.SESE.EE | |
Retrocopy | LSEEPILKWYKGTHVAKGKSVFLEQMRKFGEWFKNPEEGSESEAEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 15 .46 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .33 RPM |
SRP007412_heart | 0 .00 RPM | 98 .22 RPM |
SRP007412_kidney | 0 .00 RPM | 27 .46 RPM |
SRP007412_liver | 0 .00 RPM | 7 .64 RPM |
SRP007412_testis | 0 .04 RPM | 3 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2881 |
Pan troglodytes | retro_ptro_1949 |
Gorilla gorilla | retro_ggor_1997 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001663 | 4 retrocopies | |
Equus caballus | ENSECAG00000022038 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017045 | 1 retrocopy |
retro_mmul_1457 ,
|
Ochotona princeps | ENSOPRG00000005256 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017763 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014571 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002506 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009806 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009867 | 1 retrocopy |