RetrogeneDB ID: | retro_dnov_2304 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_62352:8204..8759(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | APOPT1 | ||
Ensembl ID: | ENSDNOG00000019553 | ||
Aliases: | None | ||
Description: | apoptogenic 1, mitochondrial [Source:HGNC Symbol;Acc:20492] |
Percent Identity: | 69.52 % |
Parental protein coverage: | 98.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAAWRPRRRLLLPLLGRAFAGR-GRQPAPERGAERREAAPSRVSSSHHDWIGPPDKYSNLRPVQFYIPEN |
..A.R...R.LL.LL.R.F....GRQ.APE.GAE.REAA.S.VSSSHHDWIGPPDKYSNL.PVQFY.P.. | |
Retrocopy | LVAFRLASRTLLSLLCRVFVCP<GRQLAPEHGAEYREAASSPVSSSHHDWIGPPDKYSNLQPVQFYVPXX |
Parental | ESPLERKLRELRQETQEWNQRFWTNQNLTFSKEKE-EFIHSRLKARGLGGSAGSGQKPTLNAEEMAEFYK |
.SP.E.KLRELR.ETQEWNQ.FW.NQNLTFSKEKE..FIH.RLKARGL...AGSGQK.TLNAEEMAEFYK | |
Retrocopy | XSPPEQKLRELR*ETQEWNQQFWANQNLTFSKEKE>SFIHLRLKARGLVVRAGSGQKATLNAEEMAEFYK |
Parental | EFLNKNFQKHMYYNRGWYKHNFAVTFFLGKLTPKRIWKKFGLKQKKT |
EFLNKN.Q..MY.NR.WY...F..TFF.G.....RIWK..GL.Q..T | |
Retrocopy | EFLNKNIQELMYFNRDWYTRKFSLTFFMG*VALERIWKRLGLNQETT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 6 .61 RPM |
SRP012922_cerebellum | 0 .00 RPM | 8 .39 RPM |
SRP012922_heart | 0 .00 RPM | 4 .64 RPM |
SRP012922_kidney | 0 .00 RPM | 4 .38 RPM |
SRP012922_liver | 0 .00 RPM | 2 .01 RPM |
SRP012922_lung | 0 .00 RPM | 3 .82 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 8 .48 RPM |
SRP012922_spleen | 0 .00 RPM | 4 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030884 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019553 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000011728 | 1 retrocopy | |
Felis catus | ENSFCAG00000027939 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000009792 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002350 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015416 | 1 retrocopy |