RetrogeneDB ID: | retro_dnov_2391 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_70266:7545..7903(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | APOPT1 | ||
Ensembl ID: | ENSDNOG00000019553 | ||
Aliases: | None | ||
Description: | apoptogenic 1, mitochondrial [Source:HGNC Symbol;Acc:20492] |
Percent Identity: | 73.98 % |
Parental protein coverage: | 64.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAAWRPRRRLLLPLLGRAFAGRGRQPAPERGA-ERREAAPSR-VSSSHHDWIGPPDKYSNLRPVQFYIPE |
M.AW.P..RL.L.LLG..FAG.G...APER.A.E.REA.PSR.VSSS...WIGPPDKYSNL..VQFYIPE | |
Retrocopy | MVAWQPQTRLFLLLLGCTFAGSGCRSAPERNA<EHREAGPSR<VSSSRQVWIGPPDKYSNLPSVQFYIPE |
Parental | NESPLERKLRELRQETQEWNQRFWTNQNLTFSKEKEEFIHSRLKARGLGGSAG |
NESPLE.KLRE.RQETQEWNQ.FW...NLTFSKEK.EFIH.RLKARGLG.S.G | |
Retrocopy | NESPLEQKLREMRQETQEWNQQFWA*KNLTFSKEK-EFIHWRLKARGLGVSTG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 6 .61 RPM |
SRP012922_cerebellum | 0 .27 RPM | 8 .39 RPM |
SRP012922_heart | 0 .00 RPM | 4 .64 RPM |
SRP012922_kidney | 0 .00 RPM | 4 .38 RPM |
SRP012922_liver | 0 .15 RPM | 2 .01 RPM |
SRP012922_lung | 0 .00 RPM | 3 .82 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 8 .48 RPM |
SRP012922_spleen | 0 .11 RPM | 4 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030884 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019553 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000011728 | 1 retrocopy | |
Felis catus | ENSFCAG00000027939 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000009792 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002350 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015416 | 1 retrocopy |