RetrogeneDB ID: | retro_eeur_107 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_6597:27215..27480(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | APOPT1 | ||
Ensembl ID: | ENSEEUG00000011728 | ||
Aliases: | None | ||
Description: | apoptogenic 1, mitochondrial [Source:HGNC Symbol;Acc:20492] |
Percent Identity: | 79.35 % |
Parental protein coverage: | 70.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | PVPFYIPDNELPLQ-KLKQSR-ETQEWNQMFWENQNLTFSKEKEEFIHSRLKAKG-LGLRAESGQ-KATL |
PVPFYIPDNELPLQ.KLKQSR.ETQEWNQMFWENQNLTFSKEKEEFIH..LKA.G....RAESG..K... | |
Retrocopy | PVPFYIPDNELPLQ*KLKQSR*ETQEWNQMFWENQNLTFSKEKEEFIHLGLKAEG<MRMRAESGE<KSNI |
Parental | SADEMADFYKEFLSKNFQKHMY |
...EMA.FYKEFLSKN.QKHMY | |
Retrocopy | -VEEMAGFYKEFLSKNLQKHMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .00 RPM |
SRP017611_liver | 0 .00 RPM | 5 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030884 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019553 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000011728 | 1 retrocopy |
retro_eeur_107 ,
|
Felis catus | ENSFCAG00000027939 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000009792 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002350 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015416 | 1 retrocopy |