RetrogeneDB ID: | retro_dnov_2656 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_95282:1053..1619(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA2 | ||
Ensembl ID: | ENSDNOG00000010745 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
Percent Identity: | 78.95 % |
Parental protein coverage: | 65.37 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | NVVEEELDEEYVIITLVPVKEEPQEEHQMEPSTSTAEVKVKK-SRKKDKVHLPEMNEQFKACSKPGYKEP |
NV.EEELDEE.VIITLVPVKE.PQEEHQMEP.T.TAEVK.KK..RKKDKVHLP.M..Q.K.CSKP.Y.EP | |
Retrocopy | NVFEEELDEEHVIITLVPVKERPQEEHQMEPRTPTAEVKLKK<ARKKDKVHLPQMSKQSKVCSKPSYQEP |
Parental | VLPLPTILPPVNKIHRNTLRKWCQQFNLSTDGQKIEVYLRLQQHAYPEQKQDIPDTPQEAKLQSCTKRCK |
VLPL.TILPP.NK.HRN..RK.CQQFNLST.GQKIEVYLRLQQHAY.EQK.DIP.TPQE.KLQSC.K.CK | |
Retrocopy | VLPLLTILPPINKTHRNPVRK*CQQFNLSTNGQKIEVYLRLQQHAYFEQK*DIPGTPQEIKLQSCSKKCK |
Parental | A----AKDQKSCKKREKEEVTNTVEVISSAQEAILASWTRIAARAAQPKT |
A....AKDQKSCK.REKEEVTNTVE.ISSAQE.ILA.WTR.AA..AQP.T | |
Retrocopy | AVTKTAKDQKSCKRREKEEVTNTVEEISSAQETILATWTRSAA*TAQPET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP012922_heart | 0 .00 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .00 RPM | 0 .00 RPM |