RetrogeneDB ID: | retro_eeur_205 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_207594:4336..4960(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA2 | ||
Ensembl ID: | ENSEEUG00000008944 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
Percent Identity: | 86.06 % |
Parental protein coverage: | 76.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PPILPLPTTLPPINEVHRDTLRNWCQQCKLSTDGQKIAVYQRLQKYAFFDSSQSVSEIPETTRMRPRPRS |
P.ILPLP.TLPPIN.VHRDTL.NWCQQCKLS..GQK.AVYQRLQKY.FFD.SQS.SEIPE.TR.RP.P.S | |
Retrocopy | PQILPLPSTLPPINKVHRDTLQNWCQQCKLSSYGQKVAVYQRLQKYGFFDNSQSISEIPEKTRLRP*PHS |
Parental | RKHTTEDKKARIRKSCQMNEKKRDTSNIVEVTSTAQEAMLAAWGRITARASQPKATLSHPVPSSVETFLP |
RKHTTE.KKARI.KSCQMNEK.RDTSNIVEVTSTAQEAMLAA.GRI.ARASQPKA..SHPVPSSVET.LP | |
Retrocopy | RKHTTEAKKARIHKSCQMNEKERDTSNIVEVTSTAQEAMLAA*GRIAARASQPKAIHSHPVPSSVETSLP |
Parental | QATGIRWCIVHGRPLSADTEGWVRLQFHVGQVWVPNTPRRMIPLFLLPACTFSTPDLEDNLLCPECVK |
QATGIRWCIVH.RPLSAD.E.WV.LQFHVGQVWV.NTPRRM.PLFLL.ACTFSTPDLEDNLLCPECVK | |
Retrocopy | QATGIRWCIVHSRPLSADAEDWVLLQFHVGQVWVRNTPRRMKPLFLLSACTFSTPDLEDNLLCPECVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .56 RPM |
SRP017611_liver | 0 .00 RPM | 0 .32 RPM |