RetrogeneDB ID: | retro_eeur_415 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_292338:6754..7171(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA2 | ||
Ensembl ID: | ENSEEUG00000008944 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
Percent Identity: | 71.14 % |
Parental protein coverage: | 54.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | YSNYENNEKNSFEQNIGEENVILTLVPVNEEPIEEYEIETTISSTAEVKPEKKLPQEQLKAPPILPLPTT |
YSNYE.NEKNSFEQN..EENVILTLVP..EEPIEE.E....I.ST.....E.K.P....KA.P.LP.... | |
Retrocopy | YSNYETNEKNSFEQNVAEENVILTLVPADEEPIEEHE----IESTISSTAEVK-PRRR-KASPVLP---- |
Parental | LPPINEVHRDTLRNWCQQCKLSTDGQKIAVYQRLQKYAFFDSSQSVSEIPETTRMRPRPRSRKHTTEDKK |
LPP.NEVHRDTL.NWCQ...LSTDGQKIAVYQRLQK.AFFDS.QS.SEIPE.TR..P.P.SRKHTTE.KK | |
Retrocopy | LPPSNEVHRDTLWNWCQ**RLSTDGQKIAVYQRLQKSAFFDSNQSISEIPEETRLWPQPLSRKHTTEAKK |
Parental | ARIRKSCQM |
ARIRKS.QM | |
Retrocopy | ARIRKSGQM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .56 RPM |
SRP017611_liver | 0 .00 RPM | 0 .32 RPM |