RetrogeneDB ID: | retro_ecab_12 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 15:9144569..9144932(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000006828 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CYB5A | ||
Ensembl ID: | ENSECAG00000017581 | ||
Aliases: | None | ||
Description: | cytochrome b5 [Source:RefSeq peptide;Acc:NP_001153204] |
Percent Identity: | 75.21 % |
Parental protein coverage: | 87.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LEEIKKHNHSKSTWLILHHKVYDLTKFLDEHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGE |
LEE..KHNHS.STWLILHHKVYD.T.FL.EHPGG..VLREQAGGDATENFED..HS.DARELSK...IGE | |
Retrocopy | LEENRKHNHSESTWLILHHKVYDSTTFLEEHPGGQAVLREQAGGDATENFEDVRHSADARELSKACVIGE |
Parental | LHPVSTFLGAFTYETLITTVDSNSSWWTNWVIPAISAVVVALMYRIY |
LHP..........ET.ITT.DSNSSWWTNW.IPAISA.VVALMYR.Y | |
Retrocopy | LHPDDRSKITKASETVITTIDSNSSWWTNWAIPAISAQVVALMYRLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 6 .26 RPM |
SRP021940_cerebellum | 0 .00 RPM | 9 .66 RPM |
SRP021940_embryo | 0 .03 RPM | 33 .91 RPM |
SRP021940_placental_villous | 0 .00 RPM | 31 .85 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 12 .60 RPM |
SRP021940_testis | 0 .06 RPM | 4 .54 RPM |