RetrogeneDB ID: | retro_pabe_1094 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:25594761..25594965(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CYB5A | ||
Ensembl ID: | ENSPPYG00000009240 | ||
Aliases: | None | ||
Description: | cytochrome b5 type A (microsomal) [Source:HGNC Symbol;Acc:2570] |
Percent Identity: | 69.57 % |
Parental protein coverage: | 51.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPETLITTVDSSSSWWTNWVIPAISAVAVALMYRLYVA |
ED..HSTDARE.SKT.IIG.L.PDDR...N...ETL.T.VDS.SS.WTNWVIPAISA..VAL.Y.LY.A | |
Retrocopy | EDIMHSTDAREFSKTYIIGGLYPDDRSVTNLS-ETLFTAVDSHSS*WTNWVIPAISALTVALRYHLYTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .55 RPM |
SRP007412_cerebellum | 0 .00 RPM | 10 .82 RPM |
SRP007412_heart | 0 .00 RPM | 14 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 427 .13 RPM |
SRP007412_liver | 0 .00 RPM | 464 .72 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1307 |
Pan troglodytes | retro_ptro_898 |
Macaca mulatta | retro_mmul_2162 |
Callithrix jacchus | retro_cjac_686 |