RetrogeneDB ID: | retro_opri_296 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_4813:142136..142523(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CYB5A | ||
Ensembl ID: | ENSOPRG00000011584 | ||
Aliases: | None | ||
Description: | cytochrome b5 type A (microsomal) [Source:HGNC Symbol;Acc:2570] |
Percent Identity: | 77.86 % |
Parental protein coverage: | 96.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NQAVKYYTLEEIKKHNHSKSTWLII-HYKVYDLTKFLE-HPGGEEVLREQAGGDATENFEDVGHSTDARE |
..A.KYYTLEEIKKHNHSKS.WLII.H.....LTKFLE.HP.GEEVLREQAGGDATENFEDVGH....RE | |
Retrocopy | SSATKYYTLEEIKKHNHSKSPWLII>HKVIIHLTKFLEEHPAGEEVLREQAGGDATENFEDVGHPIHTRE |
Parental | LSKSFIIGELHPDDRSKLSKPTETLITTIDSNSSWWTNWVIPAISALAV-ALMYRLYMADD |
LSKSFII.ELHP.DRSKLSKP..TL.TT.DSNSSWWT.WVI.AISALA..ALM..LYMA.D | |
Retrocopy | LSKSFIIRELHPEDRSKLSKPM*TLTTTVDSNSSWWTSWVITAISALAL<ALMHQLYMAHD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |