RetrogeneDB ID: | retro_eeur_587 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_349591:3081..3393(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CYB5A | ||
Ensembl ID: | ENSEEUG00000010683 | ||
Aliases: | None | ||
Description: | cytochrome b5 type A (microsomal) [Source:HGNC Symbol;Acc:2570] |
Percent Identity: | 98.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAR |
MADEAVKYYTLEE.QKHNHSKSTWLILHH.VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAR | |
Retrocopy | MADEAVKYYTLEEMQKHNHSKSTWLILHHQVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAR |
Parental | ELSKTYIIGELHPDDRSKIAKPSETLITTLDSNS |
ELSKTYIIGELHPDDRSKIAKPSETLITTLDSNS | |
Retrocopy | ELSKTYIIGELHPDDRSKIAKPSETLITTLDSNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .22 RPM | 5 .80 RPM |
SRP017611_kidney | 70 .70 RPM | 82 .33 RPM |
SRP017611_liver | 183 .45 RPM | 228 .14 RPM |