RetrogeneDB ID: | retro_cpor_1140 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:46291914..46292315(+) | ||
Located in intron of: | ENSCPOG00000010658 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CYB5A | ||
Ensembl ID: | ENSCPOG00000012111 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAGQEEQAVKYYTLEEIEKHKDSKSTWVILHHKVYDLTRFLEEHPGGEEVLREQAGGDATENFEDVGHST |
MA.QE.QAVK.YTL..I.KH.DSKST.VILHHK.YDLTRFLEEHPGG.E.LREQ.GGDATENFEDV..ST | |
Retrocopy | MARQEDQAVKNYTLDDIKKHRDSKST*VILHHKLYDLTRFLEEHPGGKEILREQDGGDATENFEDVDDST |
Parental | DARELSKTFIIGEVHPDDRPKLAKPTETLITTVES-NSSWWTNWVI-PAISALA-VAMMYRIYIAED |
DA..L.K...IGEVH.DDR.KLAKP.ETL.TTVES.N.SWWT.WVI.P.ISA.A.VAM.Y....AED | |
Retrocopy | DAGKLFKAYVIGEVHLDDRSKLAKPLETLSTTVES>NYSWWTDWVI<PVISAMA<VAMIYCFNRAED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 19 .90 RPM |
SRP017611_kidney | 0 .00 RPM | 305 .58 RPM |
SRP017611_liver | 0 .00 RPM | 1071 .06 RPM |
SRP040447_lung | 0 .00 RPM | 78 .46 RPM |
SRP040447_skeletal_muscle | 0 .03 RPM | 15 .30 RPM |