RetrogeneDB ID:

retro_ttru_1588

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_39386:528..891(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CYB5A
Ensembl ID:ENSTTRG00000015272
Aliases:None
Description:cytochrome b5 type A (microsomal) [Source:HGNC Symbol;Acc:2570]


Retrocopy-Parental alignment summary:






>retro_ttru_1588
GTGGAAGACATCCAGAAGCACAACCACAGCAAGAGCACCTGGCTGATCCTGCATTACAAGGTGTACAATTTGACCAAATT
TTTGGAGGAGCACCCTGGTGGGGTAGAAGTCTTAAGGGAACAAGCTGGAGGTGATGCTACTGAAAACTTTGAGGATGTCC
GACACTCTACAGATGCTCGAGAATTGTCCAAAACGTTTATCATTGGCGAGCTGCATCCGGATGACAGGTCAAAGATAACC
AAGCCTTCGGAAACTCTTATTACTACTATTGATTCTAATTCCAGCTGGTGGACCAGCTGGGTGATCCCAGCCATCTCAGC
ACTGGTTGTAGCCCTGATGTATCACTTCTACACATCGGAACAC

ORF - retro_ttru_1588 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.21 %
Parental protein coverage: 90.3 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLEEIQKHNHSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGE
.E.IQKHNHSKSTWLILHYKVY.LTKFLEEHPGG.EVLREQAGGDATENFEDV.HSTDARELSKTFIIGE
RetrocopyVEDIQKHNHSKSTWLILHYKVYNLTKFLEEHPGGVEVLREQAGGDATENFEDVRHSTDARELSKTFIIGE
ParentalLHPDDRSKITKPXETLITTIDSNSSWWTNWVIPAISALVVALMYHFYTSEH
LHPDDRSKITKP.ETLITTIDSNSSWWT.WVIPAISALVVALMYHFYTSEH
RetrocopyLHPDDRSKITKPSETLITTIDSNSSWWTSWVIPAISALVVALMYHFYTSEH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1588 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1588 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 51 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000136142 retrocopies
Canis familiaris ENSCAFG000000000262 retrocopies
Choloepus hoffmanni ENSCHOG000000003592 retrocopies
Callithrix jacchus ENSCJAG000000031633 retrocopies
Cavia porcellus ENSCPOG000000121111 retrocopy
Equus caballus ENSECAG000000175811 retrocopy
Erinaceus europaeus ENSEEUG000000106831 retrocopy
Echinops telfairi ENSETEG000000006911 retrocopy
Homo sapiens ENSG000001663473 retrocopies
Gorilla gorilla ENSGGOG000000079681 retrocopy
Macropus eugenii ENSMEUG000000158991 retrocopy
Myotis lucifugus ENSMLUG000000114625 retrocopies
Macaca mulatta ENSMMUG000000136073 retrocopies
Mustela putorius furoENSMPUG000000166301 retrocopy
Mus musculus ENSMUSG000000246461 retrocopy
Nomascus leucogenys ENSNLEG000000092321 retrocopy
Otolemur garnettii ENSOGAG000000000524 retrocopies
Ochotona princeps ENSOPRG000000115843 retrocopies
Pongo abelii ENSPPYG000000092402 retrocopies
Pan troglodytes ENSPTRG000000101113 retrocopies
Rattus norvegicus ENSRNOG000000152052 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000224361 retrocopy
Tupaia belangeri ENSTBEG000000149983 retrocopies
Tarsius syrichta ENSTSYG000000022411 retrocopy
Tursiops truncatus ENSTTRG000000100161 retrocopy
Tursiops truncatus ENSTTRG00000015272 1 retrocopy
retro_ttru_1588 ,
Drosophila melanogaster FBgn00298541 retrocopy



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