Parental gene:

CYB5A, ENSCJAG00000003163

Aliases:None
Description:cytochrome b5 type A (microsomal) [Source:HGNC Symbol;Acc:2570]
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:111811990..111848253(-)


>ENSCJAG00000003163
ATGGCCGAGCAGTCTGACGAGGCCGTGAAGTACTACACTCTCGAGGAGATTCAGAAGCACAACCACAGCAAGAGCACCTG
GCTGATCCTGCACCACAAGGTGTACGATTTGACCAAATTTCTGGAAGAGCATCCTGGTGGGGAGGAAGTCCTAAGGGAAC
AGGCCGGAGGTGACGCTACTGAGAACTTTGAGGATGTCGGGCACTCTACAGATGCCAGGGAATTATCCAAAACATATATC
ATTGGGGAGCTCCATCCAGATGACAGACCAAAGTTAAACAAGCCCTCGGAAACTCTTATCACTACTGTTGATTCTAGTTC
CAGTTGGTGGACCAACTGGGTGATCCCTGGCATCTCAGCAGTGGCCGTCGCCTTGATGTATCGCCTGTACATGGCGGAAG
ACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 15 .17 RPM
SRP051959_skeletal_muscle 7 .49 RPM
SRP051959_lymph_node 5 .87 RPM
SRP051959_lung 16 .37 RPM
SRP051959_liver 241 .17 RPM
SRP051959_kidney 131 .34 RPM
SRP051959_heart 14 .56 RPM
SRP051959_colon 16 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013614 ortholog_one2one 2 retrogenes
retro_amel_1727, retro_amel_860,
Canis familiaris ENSCAFG00000000026 ortholog_one2many 2 retrogenes
retro_cfam_32, retro_cfam_787,
Choloepus hoffmanni ENSCHOG00000000359 ortholog_one2one 2 retrogenes
retro_chof_128, retro_chof_239,
Cavia porcellus ENSCPOG00000012111 ortholog_one2one 1 retrogene
retro_cpor_1140,
Equus caballus ENSECAG00000017581 possible_ortholog 1 retrogene
retro_ecab_12,
Erinaceus europaeus ENSEEUG00000010683 ortholog_one2one 1 retrogene
retro_eeur_587,
Echinops telfairi ENSETEG00000000691 ortholog_one2one 1 retrogene
retro_etel_381,
Homo sapiens ENSG00000166347 ortholog_one2one 3 retrogenes
retro_hsap_1307, retro_hsap_1373, retro_hsap_2462,
Gorilla gorilla ENSGGOG00000007968 ortholog_one2one 1 retrogene
retro_ggor_1068,
Macropus eugenii ENSMEUG00000015899 ortholog_one2one 1 retrogene
retro_meug_1573,
Myotis lucifugus ENSMLUG00000011462 ortholog_one2one 5 retrogenes
retro_mluc_1159, retro_mluc_1333, retro_mluc_1475, retro_mluc_1701, retro_mluc_1908,
Macaca mulatta ENSMMUG00000013607 ortholog_one2one 3 retrogenes
retro_mmul_2162, retro_mmul_2199, retro_mmul_546,
Mustela putorius furo ENSMPUG00000016630 ortholog_one2one 1 retrogene
retro_mputfur_776,
Mus musculus ENSMUSG00000024646 ortholog_one2one 1 retrogene
retro_mmus_2177,
Nomascus leucogenys ENSNLEG00000009232 ortholog_one2one 1 retrogene
retro_nleu_1066,
Otolemur garnettii ENSOGAG00000000052 ortholog_one2one 4 retrogenes
retro_ogar_1248, retro_ogar_1888, retro_ogar_2041, retro_ogar_2869,
Ochotona princeps ENSOPRG00000011584 ortholog_one2one 3 retrogenes
retro_opri_1091, retro_opri_296, retro_opri_405,
Pongo abelii ENSPPYG00000009240 ortholog_one2one 2 retrogenes
retro_pabe_1094, retro_pabe_1140,
Pan troglodytes ENSPTRG00000010111 ortholog_one2one 3 retrogenes
retro_ptro_1421, retro_ptro_898, retro_ptro_943,
Rattus norvegicus ENSRNOG00000015205 ortholog_one2many 2 retrogenes
retro_rnor_1565, retro_rnor_2455,
Ictidomys tridecemlineatus ENSSTOG00000022436 ortholog_one2one 1 retrogene
retro_itri_1617,
Tupaia belangeri ENSTBEG00000014998 ortholog_one2one 3 retrogenes
retro_tbel_3229, retro_tbel_3338, retro_tbel_4600,
Tarsius syrichta ENSTSYG00000002241 ortholog_one2one 1 retrogene
retro_tsyr_1033,
Tursiops truncatus ENSTTRG00000015272 ortholog_one2one 1 retrogene
retro_ttru_1588,
Drosophila melanogaster FBgn0029854 possible_ortholog 1 retrogene
retro_dmel_39,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_686 60.87 51.49
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2. retro_cjac_2427 89.52 92.54
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3. retro_cjac_2602 75.53 67.91
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Download FASTA sequences of all ENSCJAG00000003163 retrocopies