RetrogeneDB ID: | retro_ecab_388 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 16:75978104..75978677(-) | ||
Located in intron of: | ENSECAG00000019885 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSECAG00000015832 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 69.74 % |
Parental protein coverage: | 94.58 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MAEGQVLVLDGRGHLLGRLAAIVAKQVLL-GRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT-NPSR |
M.EGQVLVLDG.G.L.G..A..V.KQ.LL.G..VVVV.CEG.NISGNFYRNKLK.LAFL.K.M.T.NPSR | |
Retrocopy | MVEGQVLVLDG*GLLWGHVAVTVPKQGLL<GPEVVVVQCEGTNISGNFYRNKLKHLAFLQKQMDT<NPSR |
Parental | GPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYL |
G.YHFR.PS.I.WRT.RG.LPH..K.G..A.D..KV.DGIPPPY.KK.RMV.P.ALKVV.LKP.RK.A.L | |
Retrocopy | GSYHFRGPSCISWRTMRGTLPHRHK*GHTAQDLPKVPDGIPPPYNKKERMVAPTALKVVCLKPARKPASL |
Parental | GRLAHEVGWKYQAVTAT-LEEKRKEKAKIHYRKKKQLTRLRKQAEKNVEKKIDRY |
G.LA.EVGWK.QAVTAT..EEKRKE.AKIHY.KK.QL.R..KQAE.N.E.K.D.Y | |
Retrocopy | GHLALEVGWKHQAVTAT<SEEKRKEEAKIHYQKK*QLIRPWKQAEENMERKTDKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .18 RPM | 1340 .63 RPM |
SRP021940_cerebellum | 0 .21 RPM | 377 .08 RPM |
SRP021940_embryo | 0 .56 RPM | 895 .50 RPM |
SRP021940_placental_villous | 0 .29 RPM | 582 .96 RPM |
SRP021940_synovial_membrane | 0 .85 RPM | 852 .14 RPM |
SRP021940_testis | 0 .06 RPM | 357 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005296 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000029892 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000072 | 16 retrocopies | |
Equus caballus | ENSECAG00000015832 | 3 retrocopies |
retro_ecab_388 , retro_ecab_653, retro_ecab_773,
|
Echinops telfairi | ENSETEG00000017076 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002932 | 11 retrocopies | |
Loxodonta africana | ENSLAFG00000016213 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000007551 | 14 retrocopies | |
Mus musculus | ENSMUSG00000074129 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025258 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000004625 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000010251 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011298 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010958 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000020618 | 10 retrocopies | |
Sus scrofa | ENSSSCG00000003166 | 4 retrocopies |