RetrogeneDB ID: | retro_mmul_547 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:163448793..163449295(-) | ||
Located in intron of: | ENSMMUG00000023572 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2512 | ||
Ensembl ID: | ENSMMUG00000007551 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_001182348] |
Percent Identity: | 82.66 % |
Parental protein coverage: | 84.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRL |
..VVRCEGINISGNFYRNKLKYLAF..K.MNTNPSRGP.HF.APSRIFW.T..G.LP..TK.GQAA.DRL | |
Retrocopy | LLVVRCEGINISGNFYRNKLKYLAFPCKWMNTNPSRGPFHFPAPSRIFWQTMQGLLPQETK*GQAAPDRL |
Parental | KVFDGIPPPYDKKKRMVVPAALKVVRLKHTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY-RKK |
KVFDG.PPP.DKKKRMVVPAALKVVRLK.TRKFAYLGRLAHEVGWKYQ..TATLEEKRKEK.KIHY.RKK | |
Retrocopy | KVFDGVPPPHDKKKRMVVPAALKVVRLKLTRKFAYLGRLAHEVGWKYQTMTATLEEKRKEKVKIHY<RKK |
Parental | KQLMRLRKQAEKNVEKKIDKYTQ-VLKTHGLLV |
KQLM.LRKQAE.NVEKK.D..TQ.V.KTH.LLV | |
Retrocopy | KQLMKLRKQAE-NVEKKTD--TQ<VVKTHRLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 89 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 247 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 122 .30 RPM |
SRP007412_heart | 0 .00 RPM | 287 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 220 .18 RPM |
SRP007412_liver | 0 .00 RPM | 266 .72 RPM |
SRP007412_testis | 0 .00 RPM | 123 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_298 |
Gorilla gorilla | retro_ggor_334 |