RetrogeneDB ID: | retro_mmul_2179 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:118784776..118785383(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2512 | ||
Ensembl ID: | ENSMMUG00000007551 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_001182348] |
Percent Identity: | 86.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPS-RG |
MAEVQVLVLDG.GHLLGRLAAIVAKQVLLGRKVVVV..EGINISGNF.RNK.KYLAFL.KRMNTNPS.RG | |
Retrocopy | MAEVQVLVLDGQGHLLGRLAAIVAKQVLLGRKVVVVHREGINISGNF*RNKFKYLAFLCKRMNTNPS<RG |
Parental | P-YHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKHTRKFAYL |
P.YHFRAPSRIF..TVR.MLPH.TKRGQA.LD...VFDGIPPP.DKKKRMVVPAALKV.RLK.TRK.A.L | |
Retrocopy | P<YHFRAPSRIFRPTVRVMLPHETKRGQASLDCPRVFDGIPPP*DKKKRMVVPAALKVMRLKPTRKCALL |
Parental | GRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVLKTHGLLV |
GRLAHEVGWKYQAVTATLEEKRKEKAKIHYR.KKQ.MRL.KQAEKN.EKK.DKYT.VLKTHGLLV | |
Retrocopy | GRLAHEVGWKYQAVTATLEEKRKEKAKIHYRRKKQPMRLWKQAEKNLEKKTDKYTEVLKTHGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 89 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 247 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 122 .30 RPM |
SRP007412_heart | 0 .06 RPM | 287 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 220 .18 RPM |
SRP007412_liver | 0 .00 RPM | 266 .72 RPM |
SRP007412_testis | 0 .41 RPM | 123 .67 RPM |