Parental gene:

RPL13A, ENSECAG00000015832

Aliases:None
Description:ribosomal protein L13a [Source:HGNC Symbol;Acc:10304]
Organism:Horse (Equus caballus)
Coordinates:10:19314079..19318228(+)


>ENSECAG00000015832
ATGGCGGAGGGGCAGGTCCTGGTGCTGGATGGCCGGGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCCAAGCAGGT
GCTGCTGGGCCGGAAGGTGGTGGTCGTGCGCTGTGAGGGCATCAATATTTCTGGCAATTTCTACAGAAACAAGTTGAAGT
ACCTGGCCTTCCTCCGCAAGCGCATGAACACCAACCCATCCCGCGGCCCCTACCACTTCCGAGCCCCCAGCCGCATCTTC
TGGCGGACCGTGCGAGGCATGCTGCCCCACAAGACCAAGCGAGGCCAGGCCGCCCTGGACCGCCTCAAGGTGTTCGATGG
CATCCCGCCGCCCTATGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTGAAGGTCGTGCGTCTGAAGCCTACACGAA
AGTTTGCCTACCTAGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCGGTTACAGCCACTCTGGAGGAGAAGAGG
AAGGAAAAGGCCAAAATCCATTACCGGAAGAAAAAGCAGCTCACGAGGCTACGGAAACAGGCTGAAAAGAACGTGGAGAA
GAAAATTGACAGATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 852 .14 RPM
SRP021940_embryo 895 .50 RPM
SRP021940_cerebellum 377 .08 RPM
SRP021940_testis 357 .57 RPM
SRP021940_placental_villous 582 .96 RPM
SRP021940_articular_cartilage 1340 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005296 possible_ortholog 3 retrogenes
retro_btau_1251, retro_btau_719, retro_btau_789,
Canis familiaris ENSCAFG00000029892 possible_ortholog 3 retrogenes
retro_cfam_1772, retro_cfam_924, retro_cfam_976,
Callithrix jacchus ENSCJAG00000000072 possible_ortholog 16 retrogenes
retro_cjac_1130, retro_cjac_1706, retro_cjac_182, retro_cjac_197, retro_cjac_1997, retro_cjac_2170, retro_cjac_2322, retro_cjac_2467, retro_cjac_2468, retro_cjac_2665, retro_cjac_2699, retro_cjac_2755, retro_cjac_3009, retro_cjac_664, retro_cjac_941, retro_cjac_972,
Echinops telfairi ENSETEG00000017076 possible_ortholog 2 retrogenes
retro_etel_46, retro_etel_853,
Gorilla gorilla ENSGGOG00000002932 possible_ortholog 11 retrogenes
retro_ggor_12, retro_ggor_1739, retro_ggor_214, retro_ggor_2271, retro_ggor_2737, retro_ggor_334, retro_ggor_6, retro_ggor_615, retro_ggor_627, retro_ggor_846, retro_ggor_869,
Loxodonta africana ENSLAFG00000016213 ortholog_one2one 3 retrogenes
retro_lafr_1160, retro_lafr_576, retro_lafr_810,
Macaca mulatta ENSMMUG00000007551 possible_ortholog 14 retrogenes
retro_mmul_1100, retro_mmul_1256, retro_mmul_1638, retro_mmul_1756, retro_mmul_2179, retro_mmul_2249, retro_mmul_2352, retro_mmul_2399, retro_mmul_296, retro_mmul_500, retro_mmul_520, retro_mmul_547, retro_mmul_837, retro_mmul_924,
Mus musculus ENSMUSG00000074129 possible_ortholog 3 retrogenes
retro_mmus_1129, retro_mmus_1334, retro_mmus_20,
Oryctolagus cuniculus ENSOCUG00000025258 possible_ortholog 9 retrogenes
retro_ocun_1038, retro_ocun_1077, retro_ocun_1392, retro_ocun_1462, retro_ocun_304, retro_ocun_674, retro_ocun_756, retro_ocun_786, retro_ocun_972,
Otolemur garnettii ENSOGAG00000004625 possible_ortholog 7 retrogenes
retro_ogar_1496, retro_ogar_211, retro_ogar_2254, retro_ogar_3148, retro_ogar_54, retro_ogar_596, retro_ogar_612,
Pongo abelii ENSPPYG00000010251 possible_ortholog 1 retrogene
retro_pabe_148,
Pan troglodytes ENSPTRG00000011298 possible_ortholog 1 retrogene
retro_ptro_31,
Pteropus vampyrus ENSPVAG00000010958 ortholog_one2one 3 retrogenes
retro_pvam_129, retro_pvam_625, retro_pvam_771,
Rattus norvegicus ENSRNOG00000020618 possible_ortholog 10 retrogenes
retro_rnor_1073, retro_rnor_1112, retro_rnor_1212, retro_rnor_1292, retro_rnor_1357, retro_rnor_1742, retro_rnor_564, retro_rnor_593, retro_rnor_665, retro_rnor_988,
Sus scrofa ENSSSCG00000003166 possible_ortholog 4 retrogenes
retro_sscr_290, retro_sscr_300, retro_sscr_392, retro_sscr_743,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_388 69.74 94.58
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2. retro_ecab_653 61.06 98.52
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3. retro_ecab_773 65.98 92.61
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Download FASTA sequences of all ENSECAG00000015832 retrocopies