RetrogeneDB ID: | retro_ecab_950 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 7:21915737..21916266(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSECAG00000023592 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 73.74 % |
Parental protein coverage: | 65.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YPRRRGPPRNY-QQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGE |
YP..RG.P.NY.QQN.Q.SESG.KNEG..SAPEGQAQQ..P..R....PYY..R..G.RPQYSNPPVQG. | |
Retrocopy | YPHSRGAPSNY<QQNDQSSESGRKNEGLDSAPEGQAQQCQPHHRPQCLPYYLQRLSGHRPQYSNPPVQGD |
Parental | VMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFN |
..EGADNQG.GEQGRPV.QNMY.G.RP.FRRG.PRQRQ.RED..EEDKENQG.ETQGQQPP...YRRNFN | |
Retrocopy | GIEGADNQGSGEQGRPVGQNMYQG*RPPFRRGLPRQRQLREDSSEEDKENQGEETQGQQPPPHWYRRNFN |
Parental | YRRRRPENPKPQDGKET-KAADPPAENSSAPEAEQGGAE |
YR...PENP.P.D.KET.KAADPPAENSSAPEAEQ.GAE | |
Retrocopy | YRCSSPENPQPRDSKET<KAADPPAENSSAPEAEQSGAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 10 .92 RPM |
SRP021940_cerebellum | 0 .00 RPM | 7 .69 RPM |
SRP021940_embryo | 0 .08 RPM | 26 .72 RPM |
SRP021940_placental_villous | 0 .00 RPM | 9 .77 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 16 .99 RPM |
SRP021940_testis | 0 .13 RPM | 67 .59 RPM |