RetrogeneDB ID: | retro_ecab_985 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 8:11139930..11140366(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSECAG00000023592 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 64. % |
Parental protein coverage: | 54.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEK-NEGSESAPEGQAQQRRP-YRRRRFP-PYYMRRPY |
.K.AA...H.R...R.RGPP...QQNYQNSES.EK.NEGSE.APEGQA.Q..P...R...P.PYYM.R.Y | |
Retrocopy | NKCAAAWDHHRHCSRHRGPPHTHQQNYQNSES-EK>NEGSENAPEGQAPQCQPDHMRALVP>PYYMQRRY |
Parental | GRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYR-GYRPRFRRGPPRQRQPREDGNEEDKENQGDET |
G...Q.S.PPV.GEVMEG.DNQGAGEQGRPVRQ..YR.GYRP.FRR.PPRQR.PRE.G.....ENQGDET | |
Retrocopy | G*QAQCSSPPV*GEVMEGTDNQGAGEQGRPVRQKLYR<GYRPQFRRSPPRQRRPRE-GGHGGQENQGDET |
Parental | QGQQPPQRRY |
...Q.PQ... | |
Retrocopy | *CKQSPQHEH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 10 .92 RPM |
SRP021940_cerebellum | 0 .05 RPM | 7 .69 RPM |
SRP021940_embryo | 0 .13 RPM | 26 .72 RPM |
SRP021940_placental_villous | 0 .14 RPM | 9 .77 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 16 .99 RPM |
SRP021940_testis | 0 .26 RPM | 67 .59 RPM |