RetrogeneDB ID: | retro_ocun_1519 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:84028298..84029042(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSOCUG00000028047 | ||
Aliases: | YBX1, YB-1 | ||
Description: | Y box binding protein 1 (YBX1), mRNA [Source:RefSeq mRNA;Acc:NM_001082785] |
Percent Identity: | 96.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYR |
RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD.NHYR | |
Retrocopy | RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADCNHYR |
Parental | RYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGE |
.YPRRRGPPRNYQQNYQNSESGEKNEGSES.PEGQAQQR.PYRRRRFPPYYMRRPYGRRPQYSNPPVQGE | |
Retrocopy | CYPRRRGPPRNYQQNYQNSESGEKNEGSESTPEGQAQQRQPYRRRRFPPYYMRRPYGRRPQYSNPPVQGE |
Parental | VMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFN |
VMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPP.QRQPREDGNEEDKENQGDETQGQQPPQRRY.RNFN | |
Retrocopy | VMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPSQRQPREDGNEEDKENQGDETQGQQPPQRRYHRNFN |
Parental | YRRRRPDNPKPQDGKETKAADPPAENSSAPEAEQGGAE |
YRRR.PDNPKPQDGKETKAADPPAENSS.PEAEQGGAE | |
Retrocopy | YRRRCPDNPKPQDGKETKAADPPAENSSTPEAEQGGAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 81 .49 RPM |
SRP017611_liver | 0 .00 RPM | 32 .68 RPM |