RetrogeneDB ID:

retro_ogar_1350

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873543.1:7119767..7120213(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000006784
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1350
GCCACCCCCACCCTCAGCGCTGCGGACACCAAGCCCCGCACTACCTACCGGCAGCGGGCAGGGAGCGGTGGCCCGGGCGG
CCTCACGCCTGCCTGCGGGGAGAAGAAGGTCATCGCAGGAAAGGTTTTGGGGACAGTAAAATGGCTCAATGTAAGAAACG
GATATGGTTTCATAAACAGGAATGACACCAAGGAATTGCGTTTGTACAGCAGACTGCCATAAAGAAAAATAACCCCAGGA
AGTCCCTTTGCAGGGTGGGAGACGGAGAGACGGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCAGAGGCAGCAATG
TTACAATCCCCCGGTGGGATTCCAGTTCAAGGCAGTAAATACGCAGCAGACCGTAACCACGATAGGCGCTATCCACGTCG
CAGGAGTCCACGCAATTCCCAGCAGAATCACTAGAATAATGAGAGC

ORF - retro_ogar_1350 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.22 %
Parental protein coverage: 61.54 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalAAPALSAADTKPGTT-GSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKE-D
A.P.LSAADTKP.TT....AGSGGPGGLT...PA.G.KKVIA.KVLGTVKW.NVRNGYGFINRNDTKE..
RetrocopyATPTLSAADTKPRTTYRQRAGSGGPGGLT---PACGEKKVIAGKVLGTVKWLNVRNGYGFINRNDTKE<I
ParentalVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGIPVQGSKYAADRNHYRRYPRRRG
.FV.QTAIKKNNPRK.L..VGDGETVEFDVVEGEKGAEAA....PGGIPVQGSKYAADRNH.RRYPRRR.
RetrocopyAFVQQTAIKKNNPRKSLCRVGDGETVEFDVVEGEKGAEAAMLQSPGGIPVQGSKYAADRNHDRRYPRRRS
ParentalPPRNYQQNYQNSES
.PRN.QQN..N.ES
Retrocopy-PRNSQQNH*NNES

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1350 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 26 parental genes, and 170 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000004949 retrocopies
Canis familiaris ENSCAFG000000025414 retrocopies
Callithrix jacchus ENSCJAG000000031556 retrocopies
Cavia porcellus ENSCPOG000000108883 retrocopies
Dipodomys ordii ENSDORG000000166271 retrocopy
Equus caballus ENSECAG0000002359220 retrocopies
Echinops telfairi ENSETEG000000041253 retrocopies
Felis catus ENSFCAG000000226046 retrocopies
Homo sapiens ENSG000000659784 retrocopies
Loxodonta africana ENSLAFG000000075971 retrocopy
Microcebus murinus ENSMICG0000001498419 retrocopies
Macaca mulatta ENSMMUG000000131365 retrocopies
Mustela putorius furoENSMPUG000000139226 retrocopies
Nomascus leucogenys ENSNLEG000000123247 retrocopies
Oryctolagus cuniculus ENSOCUG000000280472 retrocopies
Otolemur garnettii ENSOGAG00000006784 25 retrocopies
Ochotona princeps ENSOPRG0000000805011 retrocopies
Pongo abelii ENSPPYG000000014667 retrocopies
Pteropus vampyrus ENSPVAG000000055047 retrocopies
Sorex araneus ENSSARG000000078961 retrocopy
Sus scrofa ENSSSCG000000284853 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000001161 retrocopy
Tupaia belangeri ENSTBEG000000156429 retrocopies
Tarsius syrichta ENSTSYG000000069156 retrocopies
Tursiops truncatus ENSTTRG000000013532 retrocopies
Vicugna pacos ENSVPAG000000000682 retrocopies



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