RetrogeneDB ID: | retro_ecab_984 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 8:2476326..2476889(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSECAG00000023592 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 55.45 % |
Parental protein coverage: | 71.38 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 9 |
Parental | EKGAEAANVTG-PGGVPVQG-SKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESA-PEGQAQ |
E.GAEAANVTG.PG...V...SK.AA.R.........RG.....QQ..QNS.SG.KN.GSE.A.P..... | |
Retrocopy | ENGAEAANVTG<PGRAAVHT<SKRAAARGQHSCCSLHRGL-HTPQQIHQNSVSG-KNGGSENA>PKARPH |
Parental | QRRPYRRR-RFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQ-GAG-EQGRPV-RQNMYR-GYRPRFRR- |
...P...R.R.PP.YM.RPYG..PQ.S.PPVQ.EVMEG.D.Q.GAG.EQGRPV.RQ..YR.GYRP..RR. | |
Retrocopy | SDFPTAHRPRSPPHYM*RPYG*QPQCSSPPVQREVMEGTDTQ<GAG<EQGRPV<RQKLYR<GYRPQCRR< |
Parental | GPPRQRQP-REDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADP |
GPP.QRQ..REDG.....E..G.ET...QPP.R..R..FN...R..E.P.PQDG.ETKAA.P | |
Retrocopy | GPPHQRQS<REDG-QAYQEDRGQETYYKQPP*RQHRHTFNDQHRGQEIPRPQDGQETKAAAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 10 .92 RPM |
SRP021940_cerebellum | 0 .00 RPM | 7 .69 RPM |
SRP021940_embryo | 0 .03 RPM | 26 .72 RPM |
SRP021940_placental_villous | 0 .00 RPM | 9 .77 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 16 .99 RPM |
SRP021940_testis | 0 .06 RPM | 67 .59 RPM |