RetrogeneDB ID: | retro_ogar_3366 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873805.1:52642..53379(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000025543 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000006784 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | MSSEAETQQPPAAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGG-DKKVIATKVLGTVKWFNVRNGY |
MSS.A.TQQPPAA.P....ADTKP.T.GSGAGS.GPG.LTS..PAG...KKVI..KVL.TVK.F.VRN.Y | |
Retrocopy | MSS*ADTQQPPAALPS-GNADTKPNTRGSGAGSSGPGSLTSVVPAGR<NKKVITRKVLETVK*FSVRNRY |
Parental | GFINRNDTKEDVFVHQTAI-KKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGIPVQGSKYAAD |
.FINRND.KEDVFVHQTAI..KNNP.KYL..VG.GETVEFDVVEGEKG.EA..VT.PGGIPVQGSKYAAD | |
Retrocopy | DFINRNDSKEDVFVHQTAI<MKNNPLKYLPGVGGGETVEFDVVEGEKGVEATTVTSPGGIPVQGSKYAAD |
Parental | RNHYRRYPRRRGPPRNYQQNYQNSE-SGEKNEG-SESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYS |
.N.Y..YP..R.P..NYQQNYQN.E..G.K..G.SESAPEGQAQQRRPY...RFPPYYM.RPY...PQYS | |
Retrocopy | LNNYGHYPSCRDPECNYQQNYQNNE>TGVKEGG>SESAPEGQAQQRRPYHT*RFPPYYM*RPYRHQPQYS |
Parental | NPPVQGEVME-GADNQGAGEQGRPVRQNMYRGYRPRFRRYGP |
NPPVQGEV.E.GADNQ....QG..V.QNMY.GYRP...R..P | |
Retrocopy | NPPVQGEVIE<GADNQNTRKQGTLVKQNMYWGYRPGLHRVPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |