RetrogeneDB ID: | retro_eeur_161 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_116804:153..431(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSEEUG00000011609 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 55.21 % |
Parental protein coverage: | 70.37 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | FIRHQSDRYVKIKRNSRKPRGIDTRVRRRFKGQILMPNIGYGSSRKTKHM-LPSGFRKFLVHNVKELEVL |
FI.H.S....KIK.....P.G.D.RV..RFK..IL.P.IG....RK..HM..PSGF.K.L......LEVL | |
Retrocopy | FI*HWSV*HIKIKHKWSEPKG-DRRVHSRFKCHILLPTIGVEAIRKQRHM<VPSGF*K-LPNLSTKLEVL |
Parental | LMCNKSYCAEIAHNVSSKNRKAIVER |
LMCNKSY.AE.AHNVSSK..K.I..R | |
Retrocopy | LMCNKSYYAEVAHNVSSKKHKVIFKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 63 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 192 .42 RPM |
SRP017611_liver | 0 .00 RPM | 132 .16 RPM |