RetrogeneDB ID: | retro_eeur_576 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_347104:10056..10458(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSEEUG00000011609 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 84.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNSRKPRGIDTRVRRRFKGQILMPNIGYGSSRKTKHML |
MAALRPLVKPKI.KK.TKKFI.HQSD.YVKIKRN.RKPR.ID..V.RRFKGQILMPNI.YGSSRKTKH.L | |
Retrocopy | MAALRPLVKPKIIKKQTKKFIQHQSDHYVKIKRNWRKPRAIDNCVQRRFKGQILMPNIVYGSSRKTKHVL |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE |
PSG.RKFLV.NVKELEV.LMCNKS.CAEI.HNV.SKNRKAI.ERAAQLAIRVTNP.ARL..EENE | |
Retrocopy | PSGCRKFLVQNVKELEVPLMCNKS*CAEITHNV-SKNRKAIMERAAQLAIRVTNPKARLHGEENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 63 .01 RPM |
SRP017611_kidney | 0 .56 RPM | 192 .42 RPM |
SRP017611_liver | 0 .00 RPM | 132 .16 RPM |