RetrogeneDB ID: | retro_acar_104 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 3:64497087..64497492(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSACAG00000014763 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPALRPLIKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
MPALRPLIKPKIVKKRTKKFI.HQSDRYVKIK.N.RKPRGIDNRVRRRFKGQILMPNIGYGSNKKTK.ML | |
Retrocopy | MPALRPLIKPKIVKKRTKKFICHQSDRYVKIKHN*RKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKYML |
Parental | PSGFKKFLVHNVKELEVLMMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE |
PSGFKKFLVHNVKELE.LMMSNKSYCAEIAHNVSSKN.KV.VERAAQLAIKVTNPNARLRSEENE | |
Retrocopy | PSGFKKFLVHNVKELEALMMSNKSYCAEIAHNVSSKNWKVSVERAAQLAIKVTNPNARLRSEENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 12 .18 RPM | 3271 .10 RPM |
SRP009831_brain | 0 .52 RPM | 360 .16 RPM |
SRP009831_dewlap | 0 .80 RPM | 479 .50 RPM |
SRP009831_embryo | 3 .26 RPM | 1036 .30 RPM |
SRP009831_heart | 1 .71 RPM | 822 .13 RPM |
SRP009831_liver | 0 .08 RPM | 717 .42 RPM |
SRP009831_lung | 0 .30 RPM | 404 .09 RPM |
SRP009831_ovary | 0 .54 RPM | 339 .10 RPM |
SRP009831_skeletal_muscle | 0 .25 RPM | 279 .72 RPM |