RetrogeneDB ID: | retro_eeur_39 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_2406:50412..50804(+) | ||
Located in intron of: | ENSEEUG00000008977 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSEEUG00000011609 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 85.07 % |
Parental protein coverage: | 97.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNSRKPRGIDTRV-RRRFKGQILMPNIGYGSSRKTKHMLPS |
LRPLVKPKIVK.RTKKFI.HQSDRYVKIKRN.R..RGIDT...RR.FKGQILMP.IGYGSSRKTKHML.S | |
Retrocopy | LRPLVKPKIVK*RTKKFIWHQSDRYVKIKRNWRNLRGIDTHA>RR-FKGQILMPSIGYGSSRKTKHMLSS |
Parental | GFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQ-LAIRVTNPNARLRSEENE |
G.RKFLVHNVKELEVLLM.NKSYC.EIAH.VSSKNRKAIVERA.Q..AIR.TNPN.RLRSEENE | |
Retrocopy | GSRKFLVHNVKELEVLLMFNKSYCSEIAH-VSSKNRKAIVERAGQ>RAIRITNPNTRLRSEENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 63 .01 RPM |
SRP017611_kidney | 1 .31 RPM | 192 .42 RPM |
SRP017611_liver | 1 .13 RPM | 132 .16 RPM |