RetrogeneDB ID: | retro_eeur_247 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_222328:8143..8469(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSEEUG00000011609 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 90.91 % |
Parental protein coverage: | 80.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNSRKPRGIDTRVRRRFKGQILMPNIGYGSSRKTKHML |
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRN.RKPRGID.RVRRRFKGQILMPNIGYGSSRKTKHML | |
Retrocopy | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNRRKPRGIDNRVRRRFKGQILMPNIGYGSSRKTKHML |
Parental | PSGFRKFLVHNVKELEVLLMCNKS-YCAEIAHNVSSKNRK |
PSG.RKFLVHNVKELEV.LMCNKS.Y.A.I.HNVSSK..K | |
Retrocopy | PSGSRKFLVHNVKELEVPLMCNKS<Y*ADIVHNVSSKSTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .51 RPM | 63 .01 RPM |
SRP017611_kidney | 13 .32 RPM | 192 .42 RPM |
SRP017611_liver | 9 .32 RPM | 132 .16 RPM |