RetrogeneDB ID: | retro_eeur_300 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_246920:950..1342(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000012716 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSEEUG00000011609 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 92.42 % |
Parental protein coverage: | 97.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNSRKPRGIDTRVRR-RFKGQILMPNIGYGSSRKTKHM |
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRN.RKPRGID.RVRR.RFKGQILMPNIGYGSSRKTKHM | |
Retrocopy | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNRRKPRGIDNRVRR<RFKGQILMPNIGYGSSRKTKHM |
Parental | LPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRS |
LPSG.RKFLVHNVKELEV.LMCNKSY.A.I.HNVSSKN.KAIVERAAQLAIRVTNPNARL.S | |
Retrocopy | LPSGSRKFLVHNVKELEVPLMCNKSY*ADIVHNVSSKNHKAIVERAAQLAIRVTNPNARLHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .06 RPM | 63 .01 RPM |
SRP017611_kidney | 8 .44 RPM | 192 .42 RPM |
SRP017611_liver | 8 .36 RPM | 132 .16 RPM |